Evidence map›Paper›PMID 39906497›Full record

ArticleApplications in plant sciences

Expression-based machine learning models for predicting plant tissue identity.

Sourabh Palande, Jeremy Arsenault, Patricia Basurto-Lozada, Andrew Bleich, Brianna N I Brown, Sophia F Buysse, Noelle A Connors, Sikta Das Adhikari, Kara C Dobson, Francisco Xavier Guerra-Castillo and 31 more

Abstract read
In one paragraph

Article in Applications in plant sciences. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors.

Sourabh PalandeDepartment of Computational Mathematics, Science and Engineering Michigan State University East Lansing Michigan USA.
Jeremy ArsenaultDepartment of Computer Science and Engineering Michigan State University East Lansing Michigan USA.
Patricia Basurto-LozadaLaboratorio Internacional de Investigación sobre el Genoma Humano (LIIGH) Universidad Nacional Autónoma de México Juriquilla Querétaro Mexico.
Andrew BleichDepartment of Plant Biology Michigan State University East Lansing Michigan USA.
Brianna N I BrownDepartment of Plant Biology Michigan State University East Lansing Michigan USA.
Sophia F BuysseDepartment of Plant Biology Michigan State University East Lansing Michigan USA.
Noelle A ConnorsDepartment of Horticulture Michigan State University East Lansing Michigan USA.
Sikta Das AdhikariDepartment of Computational Mathematics, Science and Engineering Michigan State University East Lansing Michigan USA.
Kara C DobsonEcology, Evolution, and Behavior Program Michigan State University East Lansing Michigan USA.
Francisco Xavier Guerra-CastilloUnidad de Investigación Médica en Inmunología e Infectología Instituto Mexicano del Seguro Social Ciudad de México Mexico.
Maria F Guerrero-CarrilloLaboratory of Agrigenomic Sciences, Escuela Nacional de Estudios Superiores Unidad León Universidad Nacional Autónoma de México León Guanajuato Mexico.
Sophia HarlowDepartment of Horticulture Michigan State University East Lansing Michigan USA.
Héctor Herrera-OrozcoPosgrado en Ciencias Biológicas Universidad Nacional Autónoma de México Ciudad de México Mexico.
Asia T HightowerDepartment of Plant Biology Michigan State University East Lansing Michigan USA.
Paulo IzquierdoDepartment of Plant, Soil, and Microbial Sciences Michigan State University East Lansing Michigan USA.
MacKenzie JacobsDepartment of Biochemistry and Molecular Biology Michigan State University East Lansing Michigan USA.
Nicholas A JohnsonEcology, Evolution, and Behavior Program Michigan State University East Lansing Michigan USA.
Wendy LeuenbergerEcology, Evolution, and Behavior Program Michigan State University East Lansing Michigan USA.
Alessandro Lopez-HernandezLaboratorio Internacional de Investigación sobre el Genoma Humano (LIIGH) Universidad Nacional Autónoma de México Juriquilla Querétaro Mexico.
Alicia Luckie-DuqueLaboratory of Agrigenomic Sciences, Escuela Nacional de Estudios Superiores Unidad León Universidad Nacional Autónoma de México León Guanajuato Mexico.
Camila Martínez-AvilaColección Nacional de Aves, Posgrado en Ciencias Biológicas, Instituto de Biología Universidad Nacional Autónoma de México Ciudad de México Mexico.
Eddy J Mendoza-GalindoLaboratory of Agrigenomic Sciences, Escuela Nacional de Estudios Superiores Unidad León Universidad Nacional Autónoma de México León Guanajuato Mexico.
David Cruz PlancarteDepartamento de Botánica, Posgrado en Ciencias Biológicas, Instituto de Biología Universidad Nacional Autónoma de México Ciudad de México Mexico.
Jenny M SchusterMolecular Plant Sciences Program Michigan State University East Lansing Michigan USA.
Harry ShomerDepartment of Computer Science and Engineering Michigan State University East Lansing Michigan USA.
Sidney C SitarDepartment of Plant, Soil, and Microbial Sciences Michigan State University East Lansing Michigan USA.
Anne K SteensmaDepartment of Plant Biology Michigan State University East Lansing Michigan USA.
Joanne Elise ThomsonMolecular Plant Sciences Program Michigan State University East Lansing Michigan USA.
Damián Villaseñor-AmadorPrograma de Posgrado en Ciencias Biológicas, Facultad de Ciencias Universidad Nacional Autónoma de México Ciudad de México Mexico.
Robin WatermanDepartment of Plant Biology Michigan State University East Lansing Michigan USA.
Brandon M WebsterDepartment of Plant Biology Michigan State University East Lansing Michigan USA.
Madison WhyteDepartment of Plant, Soil, and Microbial Sciences Michigan State University East Lansing Michigan USA.
Sofía Zorilla-AzcuéPrograma de Posgrado en Ciencias Biológicas, Escuela Nacional de Estudios Superiores (ENES) Unidad Morelia, Universidad Nacional Autónoma de México Morelia Michoacán Mexico.
Beronda L MontgomeryDepartment of Biology Grinnell College Grinnell Iowa USA.
Aman Y HusbandsDepartment of Biology University of Pennsylvania Philadelphia Pennsylvania USA.
Arjun KrishnanDepartment of Biomedical Informatics, Center for Health AI University of Colorado Anschutz Medical Campus Aurora Colorado USA.
Sarah PercivalDepartment of Computational Mathematics, Science and Engineering Michigan State University East Lansing Michigan USA.
Elizabeth MunchDepartment of Computational Mathematics, Science and Engineering Michigan State University East Lansing Michigan USA.
Robert VanBurenDepartment of Horticulture Michigan State University East Lansing Michigan USA.
Daniel H ChitwoodDepartment of Computational Mathematics, Science and Engineering Michigan State University East Lansing Michigan USA.ORCID 0000-0003-4875-1447
Alejandra Rougon-CardosoLaboratory of Agrigenomic Sciences, Escuela Nacional de Estudios Superiores Unidad León Universidad Nacional Autónoma de México León Guanajuato Mexico.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Premise: The selection of Methods: Here, we examine the ability of models based on Results: The identity of belowground tissue can be predicted more accurately than other tissue types, and the ability to predict tissue identity is not correlated with phylogenetic distance from Discussion: Our data-driven results highlight that the assertion that knowledge from

Indexed as

Arabidopsisflowering plantsgene expressionmachine learningmodel speciestissue identity

Identifiers

PMID39906497
PMCPMC11788907

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.