Evidence map›Paper›PMID 39905070›Full record

ArticleNature communications2025

Molecular basis for azetidine-2-carboxylic acid biosynthesis.

Tim J Klaubert, Jonas Gellner, Charles Bernard, Juliana Effert, Carine Lombard, Ville R I Kaila, Helge B Bode, Yanyan Li, Michael Groll

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
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  4. Article
  5. 4″-Methyl-ACS chemical biology · 2026
    Article
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  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tim J KlaubertCenter for Protein Assemblies, Department Bioscience, School of Natural Sciences, Technical University Munich, Garching, Germany.ORCID http://orcid.org/0009-0007-9020-5892
Jonas Gellner *Center for Protein Assemblies, Department Bioscience, School of Natural Sciences, Technical University Munich, Garching, Germany.
Charles Bernard *Laboratory Molecules of Communication and Adaptation of Microorganisms (MCAM), UMR 7245 CNRS-MNHN (Muséum National d'Histoire Naturelle), Paris, France.ORCID http://orcid.org/0000-0002-8354-5350
Juliana Effert *Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, Marburg, Germany.ORCID http://orcid.org/0009-0004-6415-4305
Carine LombardLaboratory Molecules of Communication and Adaptation of Microorganisms (MCAM), UMR 7245 CNRS-MNHN (Muséum National d'Histoire Naturelle), Paris, France.
Ville R I KailaDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-4464-6324
Helge B BodeMax Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, Marburg, Germany.
Yanyan LiLaboratory Molecules of Communication and Adaptation of Microorganisms (MCAM), UMR 7245 CNRS-MNHN (Muséum National d'Histoire Naturelle), Paris, France. yanyan.li@mnhn.fr.ORCID http://orcid.org/0000-0002-3156-391X
Michael GrollCenter for Protein Assemblies, Department Bioscience, School of Natural Sciences, Technical University Munich, Garching, Germany. michael.groll@tum.de.ORCID http://orcid.org/0000-0002-1660-340X

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-20-CE92-0038-01Deutsche Forschungsgemeinschaft (German Research Foundation) 325871075-SFB 1309Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) KAW 2019.0251Leibniz-Gemeinschaft (Leibniz Association) pr83roVetenskapsrådet (Swedish Research Council) NAISS 2023/1-31, NAISS 2023/6-128
6 · The paper itself

Abstract

Azetidine-2-carboxylic acid (AZE) is a long-known plant metabolite. Recently, AZE synthases have been identified in bacterial natural product pathways involving non-ribosomal peptide synthetases. AZE synthases catalyse the intramolecular 4-exo-tet cyclisation of S-adenosylmethionine (SAM), yielding a highly strained heterocycle. Here, we combine structural and biochemical analyses with quantum mechanical calculations and mutagenesis studies to reveal catalytic insights into AZE synthases. The cyclisation of SAM is facilitated by an exceptional substrate conformation and supported by desolvation effects as well as cation-π interactions. In addition, we uncover related SAM lyases in diverse bacterial phyla, suggesting a wider prevalence of AZE-containing metabolites than previously expected. To explore the potential of AZE as a proline mimic in combinatorial biosynthesis, we introduce an AZE synthase into the pyrrolizixenamide pathway and thereby engineer analogues of azabicyclenes. Taken together, our findings provide a molecular framework to understand and exploit SAM-dependent cyclisation reactions.

Indexed as

Azetidinecarboxylic AcidBacteriaBacterial ProteinsCyclizationPeptide SynthasesS-AdenosylmethionineAzetidinecarboxylic AcidBacterial ProteinsPeptide SynthasesS-Adenosylmethionine

Identifiers

PMID39905070
PMCPMC11794875

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.