Evidence map›Paper›PMID 39904998›Full record

ArticleScientific data2025

Metagenome-assembled-genomes recovered from the Arctic drift expedition MOSAiC.

William Boulton, Asaf Salamov, Igor V Grigoriev, Sara Calhoun, Kurt LaButti, Robert Riley, Kerrie Barry, Allison A Fong, Clara J M Hoppe, Katja Metfies and 13 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

William BoultonSchool of Computing Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Asaf SalamovU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Igor V GrigorievU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-3136-8903
Sara CalhounU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Kurt LaButtiU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Robert RileyU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Kerrie BarryU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Allison A FongAlfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany.
Clara J M HoppeAlfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany.ORCID http://orcid.org/0000-0002-2509-0546
Katja MetfiesAlfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany.
Kersten OetjenAlfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany.
Sarah Lena EggersAlfred Wegener Institute, Am Handelshafen 12, 27570, Bremerhaven, Germany.
Oliver MüllerUniversity of Bergen, Thormøhlens gate 53 A/B, 5006, Bergen, Norway.
Jessie GardnerUiT the Arctic University of Norway, Hansine Hansens veg 18, 9019, Tromsø, Norway.
Mats A GranskogNorwegian Polar Institute, Fram Centre, Hjalmar Johansens gate 14, 9296, Tromsø, Norway.ORCID http://orcid.org/0000-0002-5035-4347
Anders TorstenssonDepartment of Aquatic Sciences and Assessment, Section for Ecology and Biodiversity, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Marc OggierUniversity of Alaska Fairbanks, 1731 South Chandalar Drive, AK, 99775, Fairbanks, USA.
Aud LarsenNORCE Norwegian Research Centre, Nygårdsgaten 112, NO-5008, Bergen, Norway.
Gunnar BratbakUniversity of Bergen, Thormøhlens gate 53 A/B, 5006, Bergen, Norway.
Andrew ToselandSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.ORCID http://orcid.org/0000-0002-6513-956X
Richard M LeggettEarlham Institute, Norwich Research Park, Colney Lane, Norwich, NR4 7UZ, UK.
Vincent MoultonSchool of Computing Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Thomas MockSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK. t.mock@uea.ac.uk.ORCID http://orcid.org/0000-0001-9604-0362

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Multidisciplinary Observatory for Study of the Arctic Climate (MOSAiC) expedition consisted of a year-long drifting survey of the Central Arctic Ocean. The ecosystems component of MOSAiC included the sampling of molecular data, with metagenomes collected from a diverse range of environments. The generation of metagenome-assembled-genomes (MAGs) from metagenomes are a starting point for genome-resolved analyses. This dataset presents a catalogue of MAGs recovered from a set of 73 samples from MOSAiC, including 2407 prokaryotic and 56 eukaryotic MAGs, as well as annotations of a near complete eukaryotic MAG using the Joint Genome Institute (JGI) annotation pipeline. The metagenomic samples are from the surface ocean, chlorophyll maximum, mesopelagic and bathypelagic, within leads and under-ice ocean, as well as melt ponds, ice ridges, and first- and second-year sea ice. This set of MAGs can be used to benchmark microbial biodiversity in the Central Arctic Ocean, compare individual strains across space and time, and to study changes in Arctic microbial communities from the winter to summer, at a genomic level.

Indexed as

MetagenomeArctic RegionsEcosystemExpeditionsIce CoverMicrobiotaOceans and Seas

Identifiers

PMID39904998
PMCPMC11794607

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.