Evidence map›Paper›PMID 39904980›Full record

ArticleNature communications2025

Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressure.

Sophie Shen, Tessa Werner, Samuel W Lukowski, Stacey Andersen, Yuliangzi Sun, Woo Jun Shim, Dalia Mizikovsky, Sakurako Kobayashi, Jennifer Outhwaite, Han Sheng Chiu and 20 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Sophie ShenInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0002-1867-050X
Tessa WernerInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Samuel W LukowskiInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Stacey AndersenInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Yuliangzi SunInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Woo Jun ShimInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0001-9446-7821
Dalia MizikovskyInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Sakurako KobayashiInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0002-9527-2791
Jennifer OuthwaiteInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Han Sheng ChiuInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Xiaoli ChenInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Gavin ChapmanVictor Chang Cardiac Research Institute, Darlinghurst, NSW, Australia.
Ella M M A MartinVictor Chang Cardiac Research Institute, Darlinghurst, NSW, Australia.ORCID http://orcid.org/0000-0001-9511-9175
Di XiaInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Duy PhamInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Zezhuo SuSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam, Hong Kong SAR, China.ORCID http://orcid.org/0000-0001-5915-1602
Daniel KimComputational Systems Biology Group, Children's Medical Research Institute, University of Sydney, Westmead, NSW, Australia.
Pengyi YangComputational Systems Biology Group, Children's Medical Research Institute, University of Sydney, Westmead, NSW, Australia.
Men Chee TanInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Enakshi SinniahInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Qiongyi ZhaoInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0002-6341-0416
Sumedha NegiInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0009-0001-7523-3576
Meredith A ReddInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.
Joseph E PowellGarvan-Weizmann Centre for Cellular Genomics, Garvan Institute of Medical Research, Darlinghurst, NSW, Australia.ORCID http://orcid.org/0000-0002-5070-4124
Sally L DunwoodieVictor Chang Cardiac Research Institute, Darlinghurst, NSW, Australia.ORCID http://orcid.org/0000-0002-2069-7349
Patrick P L TamEmbryology Research Unit, Children's Medical Research Institute, University of Sydney, Westmead, NSW, Australia.ORCID http://orcid.org/0000-0001-6950-8388
Mikael BodénSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0003-3548-268X
Joshua W K HoSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam, Hong Kong SAR, China.ORCID http://orcid.org/0000-0003-2331-7011
Quan NguyenInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia.ORCID http://orcid.org/0000-0001-7870-5703
Nathan J PalpantInstitute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia. n.palpant@uq.edu.au.ORCID http://orcid.org/0000-0002-9334-8107

Funding

Department of Education and Training | Australian Research Council (ARC) 190102793Department of Health | National Health and Medical Research Council (NHMRC) 1110751Department of Health | National Health and Medical Research Council (NHMRC) 1143163Department of Health | National Health and Medical Research Council (NHMRC) 1173469Department of Health | National Health and Medical Research Council (NHMRC) 2007896Department of Health | National Health and Medical Research Council (NHMRC) APP1107599Department of Health | National Health and Medical Research Council (NHMRC) GNT2008928National Heart Foundation of Australia (Heart Foundation) 106721
6 · The paper itself

Abstract

Pluripotent stem cells provide a scalable approach to analyse molecular regulation of cell differentiation across developmental lineages. Here, we engineer barcoded induced pluripotent stem cells to generate an atlas of multilineage differentiation from pluripotency, encompassing an eight-day time course with modulation of WNT, BMP, and VEGF signalling pathways. Annotation of in vitro cell types with reference to in vivo development reveals diverse mesendoderm lineage cell types including lateral plate and paraxial mesoderm, neural crest, and primitive gut. Interrogation of temporal and signalling-specific gene expression in this atlas, evaluated against cell type-specific gene expression in human complex trait data highlights the WNT-inhibitor gene TMEM88 as a regulator of mesendodermal lineages influencing cardiovascular and anthropometric traits. Genetic TMEM88 loss of function models show impaired differentiation of endodermal and mesodermal derivatives in vitro and dysregulated arterial blood pressure in vivo. Together, this study provides an atlas of multilineage stem cell differentiation and analysis pipelines to dissect genetic determinants of mammalian developmental physiology.

Indexed as

Blood PressureCell DifferentiationCell LineageInduced Pluripotent Stem CellsMembrane ProteinsAnimalsGene Expression Regulation, DevelopmentalHumansMesodermMiceNeural CrestSignal TransductionMembrane Proteins

Identifiers

PMID39904980
PMCPMC11794859

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.