Evidence map›Paper›PMID 39904776›Full record

ArticleJournal of neurology2025

Multi-omics profiling in spinal muscular atrophy (SMA): investigating lipid and metabolic alterations through longitudinal CSF analysis of Nusinersen-treated patients.

Martina Zandl-Lang, Thomas Züllig, Michael Holzer, Thomas O Eichmann, Barbara Darnhofer, Annette Schwerin-Nagel, Joachim Zobel, Harald Haidl, Ariane Biebl, Harald Köfeler and 1 more

Abstract read
In one paragraph

Article in Journal of neurology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Proteomic alterations in cerebrospinal fluid of spinal muscular atrophy patients undergoing nusinersen therapy: a systematic review and meta-analysis of potential biomarkers of treatment response.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Pooled it
  2. Article
  3. Longitudinal multi-omics profiling of spinal muscular atrophy.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2026
    Article
  4. Article
  5. Lipid and Metabolite Annotation Using Lipid Data Analyzer.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  6. Review
  7. Cerebrospinal fluid metabolomics reveals predictive biomarkers of nusinersen therapy efficacy in type II and type III spinal muscular atrophy patients.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Article
  8. Article
  9. Application of Biomarkers in Spinal Muscular Atrophy.International journal of molecular sciences · 2025
    Review
  10. Biomarkers in spinal muscular atrophy.Frontiers in neurology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Martina Zandl-LangResearch Unit of Analytical Mass Spectrometry, Cell Biology and Biochemistry of Inborn Errors of Metabolism, Department of Paediatrics and Adolescent Medicine, Medical University of Graz, 8036, Graz, Austria. martina.zandl@medunigraz.at.ORCID http://orcid.org/0000-0003-0522-4372
Thomas ZülligInstitute of Molecular Biosciences, University of Graz, 8010, Graz, Austria.
Michael HolzerDivision of Pharmacology, Otto Loewi Research Center for Vascular Biology, Immunology and Inflammation, Medical University of Graz, 8010, Graz, Austria.
Thomas O EichmannCore Facility Mass Spectrometry, ZMF, Medical University of Graz, 8036, Graz, Austria.
Barbara DarnhoferCore Facility Mass Spectrometry, ZMF, Medical University of Graz, 8036, Graz, Austria.
Annette Schwerin-NagelDivision of General Pediatrics, Department of Pediatrics, Medical University of Graz, 8036, Graz, Austria.
Joachim ZobelDivision of General Pediatrics, Department of Pediatrics, Medical University of Graz, 8036, Graz, Austria.
Harald HaidlDivision of General Pediatrics, Department of Pediatrics, Medical University of Graz, 8036, Graz, Austria.
Ariane BieblDepartment of Paediatrics, University Children's Hospital Linz, 4020, Linz, Austria.
Harald KöfelerCore Facility Mass Spectrometry, ZMF, Medical University of Graz, 8036, Graz, Austria.
Barbara PleckoDivision of General Pediatrics, Department of Pediatrics, Medical University of Graz, 8036, Graz, Austria.

Funding

Austrian Science Fund T-1343
6 · The paper itself

Abstract

Spinal muscular atrophy (SMA) is a rare neuromuscular disease caused by biallelic mutations in the SMN1 gene, leading to progressive muscle weakness due to degeneration of the anterior horn cells. Since 2017, SMA patients can be treated with the anti-sense oligonucleotide Nusinersen, which promotes alternative splicing of the SMN2 gene, by regular intrathecal injections. In this prospective study, we applied metabolomic, lipidomic, and proteomic analysis to examine sequential CSF samples from 13 SMA patients and controls. This multi-omic approach identified over 800 proteins and 400 small molecules including lipids. Multivariate analysis of multi-omic data successfully discriminated between the CSF derived from SMA patients and control subjects. Lipidomic analysis revealed increased levels of cholesteryl esters and lyso-phospholipids, along with reduced levels of cholesterol and phospholipids in the CSF of SMA patients as compared to healthy controls. These data, combined with results from functional assays, led us to conclude that SMA patients exhibit altered levels and function of high-density-lipoprotein (HDL)-like particles in the CSF. Notably, Nusinersen therapy was observed to reverse disease-specific profile changes toward a physiological state, potentially explicable by restoring HDL function.

Indexed as

Lipid MetabolismMuscular Atrophy, SpinalOligonucleotidesAdolescentAdultChildChild, PreschoolFemaleHumansLipidomicsLongitudinal StudiesMaleMetabolomicsMultiomicsProspective StudiesProteomicsnusinersenOligonucleotidesBiomarkerLipid metabolismMass spectrometryNeuromuscularOmics

Identifiers

PMID39904776
PMCPMC11794407

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.