Evidence map›Paper›PMID 39903729›Full record

ArticlePloS one2025

A universal method for the purification of C2H2 zinc finger arrays.

Jingchang Liang, Maia Azubel, Guanqiao Wang, Yan Nie, Roger D Kornberg, Andrew J Beel, Pierre-Jean Mattei

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jingchang LiangDepartment of Structural Biology, Stanford University, Stanford, California, United States of America.
Maia AzubelDepartment of Structural Biology, Stanford University, Stanford, California, United States of America.
Guanqiao WangShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China.
Yan NieShanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, China.
Roger D KornbergDepartment of Structural Biology, Stanford University, Stanford, California, United States of America.
Andrew J BeelDepartment of Structural Biology, Stanford University, Stanford, California, United States of America.ORCID https://orcid.org/0000-0002-3044-0651
Pierre-Jean MatteiDepartment of Structural Biology, Stanford University, Stanford, California, United States of America.ORCID https://orcid.org/0009-0003-7362-0999

Funding

Structure and Pharmacologic Modulation of the Mitotic Chromosome's Central AxisDP5OD033431 · OD · STANFORD UNIVERSITY · PI BEEL, ANDREW J. · 2022 to 2025
$2.0M
NIH HHS DP5 OD033431
6 · The paper itself

Abstract

Zinc fingers (ZFs) are compact, modular, sequence-specific polynucleotide-binding domains uniquely suited for use as DNA probes and for the targeted delivery of effector domains for purposes such as gene regulation and editing. Despite recent advances in both the design and application of ZF-containing proteins, there is still a lack of a general method for their expression and purification. Here we describe a simple method, involving two chromatographic steps, for the production of homogeneous, functional ZF proteins in high yield (one milligram per liter of bacterial culture), and we demonstrate the generality of this method by applying it to a diverse set of eight C2H2-type ZF proteins. By incorporating a surface-exposed terminal cysteine residue that enables site-specific conjugation with maleimide-activated fluorophores, we confirm the suitability of these probes for in situ labeling of specific DNA sequences in human cells.

Indexed as

CYS2-HIS2 Zinc FingersZinc FingersHumans

Identifiers

PMID39903729
PMCPMC11793764

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.