Evidence map›Paper›PMID 39899470›Full record

ArticleThe Plant cell2025

The DNA methylation-demethylation balance prevents development of multiple megaspore mother cells in Arabidopsis.

Ting Jiang, Lei Li, Qianqian Hu, Xianyu Kuang, Lei Zhang, Wenjie Zeng, Daisuke Miki, Binglian Zheng

Abstract read
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Article in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ting JiangState Key Laboratory of Genetic Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200438, China.ORCID 0000-0001-6930-5193
Lei LiState Key Laboratory of Genetic Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200438, China.ORCID 0000-0002-7134-7496
Qianqian HuState Key Laboratory of Genetic Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200438, China.ORCID 0000-0002-8532-0622
Xianyu KuangBeijing International Center for Mathematical Research, Center for Quantitative Biology, Peking University, Beijing 100871, China.ORCID 0000-0003-2662-0817
Lei ZhangBeijing International Center for Mathematical Research, Center for Quantitative Biology, Peking University, Beijing 100871, China.ORCID 0000-0001-9972-2051
Wenjie ZengShanghai Center for Plant Stress Biology, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China.ORCID 0000-0003-1054-9331
Daisuke MikiShanghai Center for Plant Stress Biology, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China.ORCID 0000-0001-6066-3357
Binglian ZhengState Key Laboratory of Genetic Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200438, China.ORCID 0000-0001-5650-5348

Funding

Ministry of Science and Technology of China 2023YFA0913503National Natural Science Foundation of China 32025005
6 · The paper itself

Abstract

Female gametophyte development initiates from the megaspore mother cell (MMC), and only 1 somatic cell develops into an MMC. Here, we report that the balance between DNA methylation and demethylation ensures the maintenance of a single MMC in Arabidopsis (Arabidopsis thaliana). Surprisingly, a decrease or an increase of all 3 DNA methylation types (mCG, mCHG, and mCHH) caused abnormal enlargement of MMC-like cells and re-balancing DNA methylation rescued the enlarged MMC-like cells in the mutants of regulators for DNA methylation and demethylation. Systematic quantification of DNA methylation at the single-cell level demonstrated that mCHH levels begin to decrease from the central precursor MMC, preceding expression of the MMC marker KNUCKLES(KNU). Disrupting the regulation of DNA methylation caused the mCHH levels to become similar in the MMC and its neighboring cells, and these neighbors usually developed into MMC-like cells. Levels of the de novo DNA methyltransferase DOMAINS REARRANGED METHYLTRANSFERASE2 (DRM2) in the precursor MMC decreased before KNU expression, but the levels of the DNA glycosylase DEMETER decreased after KNU expression. Re-introduction of DRM2 or knockdown of DEMETER specifically in neighboring cells rescued the defects in drm1 drm2 double mutants. Collectively, our findings demonstrate that the balance of DNA methylation, rather than total methylation levels, facilitates maintenance of a single MMC.

Indexed as

ArabidopsisArabidopsis ProteinsDNA MethylationGene Expression Regulation, PlantDNA DemethylationMethyltransferasesMutationN-Glycosyl HydrolasesOvuleTrans-ActivatorsArabidopsis ProteinsDEMETER protein, ArabidopsisDRM2 protein, ArabidopsisMethyltransferasesN-Glycosyl HydrolasesTrans-Activators

Identifiers

PMID39899470
PMCPMC11827614

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.