Evidence map›Paper›PMID 39899365›Full record

ArticleeLife2025

Template switching during DNA replication is a prevalent source of adaptive gene amplification.

Julie N Chuong, Nadav Ben Nun, Ina Suresh, Julia Cano Matthews, Titir De, Grace Avecilla, Farah Abdul-Rahman, Nathan Brandt, Yoav Ram, David Gresham

Abstract read
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Julie N ChuongDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, United States.ORCID https://orcid.org/0000-0002-4388-9458
Nadav Ben NunSchool of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.ORCID https://orcid.org/0009-0003-3228-7720
Ina SureshDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, United States.
Julia Cano MatthewsDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, United States.
Titir DeDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, United States.
Grace AvecillaDepartment of Natural Sciences, Baruch College CUNY, New York, United States.
Farah Abdul-RahmanDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, United States.
Nathan BrandtDepartment of Biological Sciences, North Carolina State University, Raleigh, United States.
Yoav RamSchool of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.ORCID https://orcid.org/0000-0002-9653-4458
David GreshamDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, United States.ORCID https://orcid.org/0000-0002-4028-0364

Funding

Effects of obesity on the dynamics of Influenza transmissionR01AI140766 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GRESHAM, DAVID, SCHULTZ-CHERRY, STACEY L · 2019 to 2023
$4.1M
Regulation of Quiescence in Eukaryotic CellsR01GM107466 · NIGMS · NEW YORK UNIVERSITY · PI GRESHAM, DAVID · 2013 to 2022
$3.0M
The Quantitative Biological Systems Training (QBIST) ProgramT32GM132037 · NIGMS · NEW YORK UNIVERSITY · PI David Gresham, Christine Vogel · 2019 to 2026
$2.3M
Regulated and evolutionary responses to nutritional stressR35GM153419 · NIGMS · NEW YORK UNIVERSITY · PI David Gresham · 2024 to 2026
$1.8M
Constraints and Consequences of Copy Number VariationR01GM134066 · NIGMS · NEW YORK UNIVERSITY · PI GRESHAM, DAVID · 2020 to 2023
$1.2M
Israel Science Foundation 552/19Minerva Stiftung Minerva Center for Live Emulation of Evolution in the LabNational Institute of Allergy and Infectious Diseases R01AI140766National Science Foundation 1818234National Science Foundation DGE1839302NIAID NIH HHS R01 AI140766NIGMS NIH HHS R01 GM107466NIGMS NIH HHS R01GM107466NIGMS NIH HHS R01 GM134066NIGMS NIH HHS R01GM134066NIGMS NIH HHS R35 GM153419NIGMS NIH HHS R35GM153419NIGMS NIH HHS T32 GM132037NIGMS NIH HHS T32GM132037US-Israel Binational Science Foundation 2021276
6 · The paper itself

Abstract

Copy number variants (CNVs) are an important source of genetic variation underlying rapid adaptation and genome evolution. Whereas point mutation rates vary with genomic location and local DNA features, the role of genome architecture in the formation and evolutionary dynamics of CNVs is poorly understood. Previously, we found the

Indexed as

DNA Copy Number VariationsDNA ReplicationGene AmplificationSaccharomyces cerevisiaeEvolution, MolecularSaccharomyces cerevisiae ProteinsTemplates, GeneticTerminal Repeat SequencesSaccharomyces cerevisiae Proteinscopy number variationevolutionary biologyexperimental evolutionGAP1geneticsgenomicsS. cerevisiaesimulation-based inference

Identifiers

PMID39899365
PMCPMC11790251

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.