Evidence map›Paper›PMID 39898797›Full record

ArticleThe Journal of clinical investigation2025

Transcription of hepatitis B surface antigen shifts from cccDNA to integrated HBV DNA during treatment.

Maraake Taddese, Tanner Grudda, Giulia Belluccini, Mark Anderson, Gavin Cloherty, Hyon S Hwang, Monika Mani, Che-Min Lo, Naomi Esrig, Mark S Sulkowski and 6 more

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. [Clinical significance and occurrence mechanism of hepatitis B virus DNA integration].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Maraake TaddeseDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Tanner GruddaDepartment of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA.
Giulia BellucciniLos Alamos National Laboratory, Los Alamos, New Mexico, USA.
Mark AndersonAbbott Diagnostics, Abbott Park, Illinois, USA.
Gavin ClohertyAbbott Diagnostics, Abbott Park, Illinois, USA.
Hyon S HwangDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Monika ManiDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Che-Min LoDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Naomi EsrigDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Mark S SulkowskiDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Richard K SterlingDivison of Gastroenterology, Hepatology, and Nutrition, Virginia Commonwealth University, Richmond, Virginia, USA.
Yang ZhangDivision of Gastrointestinal and Hepatic Pathology, Joint Pathology Center, Silver Spring, Maryland, USA.
Ruy M RibeiroLos Alamos National Laboratory, Los Alamos, New Mexico, USA.
David L ThomasDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Chloe L ThioDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Ashwin BalagopalDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.

Funding

Spatial Models of Intrahepatic Hepatitis C Virus Propagation in HumansR01AI116868 · NIAID · TRIAD NATIONAL SECURITY, LLC · PI ASHWIN BALAGOPAL, Ruy M Ribeiro · 2016 to 2026
$8.5M
HBV cccDNA transcriptional silencing with and without HIVR01AI181659 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ASHWIN BALAGOPAL, CHLOE L THIO · 2024 to 2026
$2.4M
Mechanisms of HBV cccDNA transcriptional regulation in persons with and without HIVR56AI138810 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BALAGOPAL, ASHWIN, THIO, CHLOE L · 2023 to 2023
$811k
Unraveling sources of hepatitis B surface antigen before and after nucleos(t)ide analogue treatment in People with HIVR21AI157760 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BALAGOPAL, ASHWIN, THIO, CHLOE L · 2021 to 2022
$450k
NIAID NIH HHS R01 AI116868NIAID NIH HHS R01 AI181659NIAID NIH HHS R21 AI157760NIAID NIH HHS R56 AI138810
6 · The paper itself

Abstract

The cornerstone of functional cure for chronic hepatitis B (CHB) is hepatitis B surface antigen (HBsAg) loss from blood. HBsAg is encoded by covalently closed circular DNA (cccDNA) and HBV DNA integrated into the host genome (iDNA). Nucleos(t)ide analogs (NUCs), the mainstay of CHB treatment, rarely lead to HBsAg loss, which we hypothesized was due to continued iDNA transcription despite decreased cccDNA transcription. To test this, we applied a multiplex droplet digital PCR that identifies the dominant source of HBsAg mRNAs to 3,436 single cells from paired liver biopsies obtained from 10 people with CHB and HIV receiving NUCs. With increased NUC duration, cells producing HBsAg mRNAs shifted their transcription from chiefly cccDNA to chiefly iDNA. This shift was due to both a reduction in the number of cccDNA-containing cells and diminished cccDNA-derived transcription per cell; furthermore, it correlated with reduced detection of proteins deriving from cccDNA but not iDNA. Despite this shift in the primary source of HBsAg, rare cells remained with detectable cccDNA-derived transcription, suggesting a source for maintaining the replication cycle. Functional cure must address both iDNA and residual cccDNA transcription. Further research is required to understand the significance of HBsAg when chiefly derived from iDNA.

Indexed as

DNA, CircularDNA, ViralHepatitis B, ChronicHepatitis B Surface AntigensHepatitis B virusTranscription, GeneticVirus IntegrationAdultAntiviral AgentsFemaleHumansMaleMiddle AgedAntiviral AgentsDNA, CircularDNA, ViralHepatitis B Surface AntigensHepatitisInfectious diseaseTranscriptionVirology

Identifiers

PMID39898797
PMCPMC11910228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.