Evidence map›Paper›PMID 39898695›Full record

ArticleLab on a chip2025

Precision single cell analysis to characterize host dependent antimicrobial response heterogeneity in physiological medium.

Ryuichiro Abe, Jyong-Huei Lee, Siew Mei Chin, Nikhil Ram-Mohan, Kristel C Tjandra, April M Bobenchik, Kathleen E Mach, Joseph C Liao, Pak Kin Wong, Samuel Yang

Abstract read
In one paragraph

Article in Lab on a chip, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ryuichiro AbeDepartment of Emergency Medicine, Stanford University School of Medicine, Stanford, CA, USA. syang5@stanford.edu.ORCID 0000-0001-9907-1180
Jyong-Huei LeeDepartment of Biomedical Engineering, The Pennsylvania State University, University Park, PA, USA. pak@engr.psu.edu.ORCID 0000-0002-8222-1784
Siew Mei ChinDepartment of Biomedical Engineering, The Pennsylvania State University, University Park, PA, USA. pak@engr.psu.edu.
Nikhil Ram-MohanDepartment of Emergency Medicine, Stanford University School of Medicine, Stanford, CA, USA. syang5@stanford.edu.ORCID 0000-0002-7761-2772
Kristel C TjandraDepartment of Emergency Medicine, Stanford University School of Medicine, Stanford, CA, USA. syang5@stanford.edu.ORCID 0000-0002-6116-0548
April M BobenchikDepartment of Pathology and Laboratory Medicine, Penn State Health, Hershey, PA, USA.ORCID 0009-0008-6167-198X
Kathleen E MachDepartment of Urology, Stanford University School of Medicine, Palo Alto, CA, USA.ORCID 0000-0003-1197-4073
Joseph C LiaoDepartment of Urology, Stanford University School of Medicine, Palo Alto, CA, USA.ORCID 0000-0003-2448-5463
Pak Kin WongDepartment of Biomedical Engineering, The Pennsylvania State University, University Park, PA, USA. pak@engr.psu.edu.
Samuel YangDepartment of Emergency Medicine, Stanford University School of Medicine, Stanford, CA, USA. syang5@stanford.edu.

Funding

Changing Cultures in Sepsis: Rapid single-cell pathogen identification and antibiotic susceptibility testing directly from whole bloodR01AI153133 · NIAID · STANFORD UNIVERSITY · PI WONG, PAK KIN, YANG, SAMUEL · 2020 to 2024
$3.7M
A "Culture" Shift: Integrated Bacterial Screening and Antibacterial Susceptibility Test on Microfluidic Digital Array for Bloodstream InfectionsR01AI137272 · NIAID · JOHNS HOPKINS UNIVERSITY · PI WANG, TZA-HUEI JEFF, YANG, SAMUEL · 2018 to 2022
$3.6M
Circulating Bacteriophages for the Diagnosis of SepsisR21GM147838 · NIGMS · STANFORD UNIVERSITY · PI BOLLYKY, PAUL L, YANG, SAMUEL · 2022 to 2023
$429k
NIAID NIH HHS R01 AI137272NIAID NIH HHS R01 AI153133NIGMS NIH HHS R21 GM147838
6 · The paper itself

Abstract

Antimicrobial stewardship plays an essential role in combating the global health threat posed by multidrug-resistant pathogens. Phenotypic antimicrobial susceptibility testing (AST) is the gold standard for analyzing bacterial responses to antimicrobials. However, current AST techniques, which rely on end-point bulk measurements of bacterial growth under antimicrobial treatment in a broth solution, have limitations in resembling the physiological working environment and resolving heterogeneity in response kinetics within the population. In this study, we investigate the responses of uropathogenic bacteria under antimicrobial treatment in individual urine. Our results demonstrate substantial heterogeneity in time-kill kinetics in response to antimicrobials in a host-dependent manner. We also establish a microfluidic gel encapsulation platform for single cell imaging to rapidly resolve heterogeneous subpopulations in response to antimicrobials. The platform captures both bacterial growth and killing within the gel and enables medium exchange to assess the ability of surviving cells to resume growth after antimicrobial removal. Our study lays the foundation for a new generation of precision single cell analysis for personalizing antimicrobial treatment.

Indexed as

Anti-Bacterial AgentsLab-On-A-Chip DevicesMicrofluidic Analytical TechniquesSingle-Cell AnalysisHumansMicrobial Sensitivity TestsAnti-Bacterial Agents

Identifiers

PMID39898695
PMCPMC13529061

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.