Evidence map›Paper›PMID 39898551›Full record

ArticleNucleic acids research2025

Local structural dynamics of Rad51 protomers revealed by cryo-electron microscopy of Rad51-ssDNA filaments.

Jie Liu, Steven K Gore, Wolf-Dietrich Heyer

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Mechanisms That Govern Recombinase Fidelity Control During Eukaryotic Homologous Recombination.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Jie LiuDepartment of Microbiology & Molecular Genetics, University of California, Davis, Davis, CA 95616-8665, United States.ORCID 0000-0001-5817-9144
Steven K GoreDepartment of Microbiology & Molecular Genetics, University of California, Davis, Davis, CA 95616-8665, United States.
Wolf-Dietrich HeyerDepartment of Microbiology & Molecular Genetics, University of California, Davis, Davis, CA 95616-8665, United States.ORCID 0000-0002-7774-1953

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Gina M Dayton · 2002 to 2026
$84.9M
The Stanford-SLAC CryoEM Center supplementU24GM129541 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH, HEDMAN, BRITT · 2018 to 2023
$54.8M
RECOMBINATIONAL MECHANISMS OF DNA REPAIR IN EUKARYOTESR01GM058015 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI HEYER, WOLF-DIETRICH · 2000 to 2025
$8.8M
Genome instability induced by homologous recombinationR01GM137751 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI HEYER, WOLF-DIETRICH · 2020 to 2023
$1.3M
Mechanisms of Recombinational DNA RepairR35GM157976 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Wolf-Dietrich Heyer · 2025 to 2026
$957k
Structure and Function of the Tumor Suppressor Protein BRCA2R21CA187561 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LIU, JIE · 2015 to 2016
$374k
Cancer Center Core Support P30CA093373NCI NIH HHS P30 CA093373NCI NIH HHS R21 CA187561NIGMS NIH HHS R01 GM058015NIGMS NIH HHS R01 GM137751NIGMS NIH HHS R35 GM157976NIGMS NIH HHS U24 GM129541NIH HHS GM58015NIH HHS U24 GM129541Stanford-SLAC Cryo-EM Center
6 · The paper itself

Abstract

Homologous recombination (HR) is a high-fidelity repair mechanism for double-strand breaks. Rad51 is the key enzyme that forms filaments on single-stranded DNA (ssDNA) to catalyze homology search and DNA strand exchange in recombinational DNA repair. In this study, we employed single-particle cryogenic electron microscopy (cryo-EM) to ascertain the density map of the wild-type budding yeast Rad51-ssDNA filament bound to ADP-AlF3, achieving a resolution of 2.35 Å without imposing helical symmetry. The model assigned 6 Rad51 protomers, 24 nt of DNA, and 6 bound ADP-AlF3. It shows 6-fold symmetry implying monomeric building blocks, unlike the structure of the Rad51-I345T mutant filament with three-fold symmetry implying dimeric building blocks, for which the structural comparisons provide a satisfying mechanistic explanation. This image analysis enables comprehensive comparisons of individual Rad51 protomers within the filament and reveals local conformational movements of amino acid side chains. Notably, R293 in Loop 1 adopts multiple conformations to facilitate L296 and V331 in separating and twisting the DNA triplets. We also analyzed the crystal structure of Rad51-I345T and the predicted structure of yeast Rad51-K342E using the Rad51-ssDNA structure from this study as a reference.

Indexed as

DNA, Single-StrandedRad51 RecombinaseSaccharomyces cerevisiae ProteinsCryoelectron MicroscopyModels, MolecularProtein ConformationSaccharomyces cerevisiaeDNA, Single-StrandedRAD51 protein, S cerevisiaeRad51 RecombinaseSaccharomyces cerevisiae Proteins

Identifiers

PMID39898551
PMCPMC11788929

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.