Evidence map›Paper›PMID 39898547›Full record

ArticleNucleic acids research2025

The short conserved region-2 of LARP4 interacts with ribosome-associated RACK1 and promotes translation.

Amitabh Ranjan, Sandy Mattijssen, Nithin Charlly, Isabel Cruz Gallardo, Leah F Pitman, Jennifer C Coleman, Maria R Conte, Richard J Maraia

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Amitabh RanjanSection on Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, United States.
Sandy MattijssenSection on Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, United States.ORCID 0000-0002-4285-7438
Nithin CharllySection on Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, United States.
Isabel Cruz GallardoRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, United Kingdom.ORCID 0000-0002-5936-2749
Leah F PitmanSection on Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, United States.
Jennifer C ColemanRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, United Kingdom.
Maria R ConteRandall Centre for Cell and Molecular Biophysics, King's College London, London SE1 1UL, United Kingdom.ORCID 0000-0001-8558-2051
Richard J MaraiaSection on Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, United States.ORCID 0000-0002-5209-0066

Funding

MOLECULAR REGULATION OF GENE EXPRESSIONZ01HD000412 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MARAIA, RICHARD J · 1988 to 2008
$1.8M
Eunice Kennedy Shriver National Institute of Child Health and Human Development HD000412-36Horizon 2020 655341Intramural NIH HHS Z01 HD000412Medical Research Council MR/N013700/1Royal Society NF140482the National Cancer Institute's Center for Cancer ResearchWellcome Trust
6 · The paper itself

Abstract

LARP4 interacts with poly(A)-binding protein (PABP) to protect messenger RNAs (mRNAs) from deadenylation and decay, and recent data indicate it can direct the translation of functionally related mRNA subsets. LARP4 was known to bind RACK1, a ribosome-associated protein, although the specific regions involved and relevance had been undetermined. Here, through a combination of in-cell and in vitro methodologies, we identified positions 615-625 in conserved region-2 (CR2) of LARP4 (and 646-656 in LARP4B) as directly binding RACK1. Consistent with these results, AlphaFold2-Multimer predicted high-confidence interaction of CR2 with RACK1 propellers 5 and 6. CR2 mutations strongly decreased LARP4 association with cellular RACK1 and ribosomes by multiple assays, whereas PABP association was less affected, consistent with independent interactions. The CR2 mutations decreased LARP4's ability to stabilize a β-globin mRNA reporter containing an AU-rich element (ARE) to higher degree than β-globin and GFP (green fluorescent protein) mRNAs lacking the ARE. We show LARP4 robustly increases translation of β-glo-ARE mRNA, whereas the LARP4 CR2 mutant is impaired. Analysis of nanoLuc-ARE mRNA for production of luciferase activity confirmed LARP4 promotes translation efficiency, while CR2 mutations are disabling. Thus, LARP4 CR2-mediated interaction with RACK1 can promote translational efficiency of some mRNAs.

Indexed as

AutoantigensNeoplasm ProteinsProtein BiosynthesisReceptors for Activated C KinaseRibonucleoproteinsRibosomesConserved SequenceHEK293 CellsHumansMutationPoly(A)-Binding ProteinsProtein BindingRNA, MessengerSS-B AntigenAutoantigensNeoplasm ProteinsPoly(A)-Binding ProteinsRACK1 protein, humanReceptors for Activated C KinaseRibonucleoproteinsRNA, MessengerSS-B Antigen

Identifiers

PMID39898547
PMCPMC11788930

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.