Evidence map›Paper›PMID 39896679›Full record

ArticlebioRxiv : the preprint server for biology2025

Extensive genome evolution distinguishes maize within a stable tribe of grasses.

Michelle C Stitzer, Arun S Seetharam, Armin Scheben, Sheng-Kai Hsu, Aimee J Schulz, Taylor M AuBuchon-Elder, Mohamed El-Walid, Taylor H Ferebee, Charles O Hale, Thuy La and 33 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Michelle C StitzerInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0003-4140-3765
Arun S SeetharamEcology, Evolution, and Organismal Biology, Iowa State University, Ames IA 50011 USA.ORCID 0000-0002-6789-9298
Armin SchebenSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724 USA.ORCID 0000-0002-2230-2013
Sheng-Kai HsuInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0002-6942-7163
Aimee J SchulzDepartment of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0002-3709-9898
Taylor M AuBuchon-ElderDonald Danforth Plant Science Center, St. Louis, Missouri 63132, USA.ORCID 0000-0002-0051-8403
Mohamed El-WalidDepartment of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0001-7030-8017
Taylor H FerebeeDepartment of Computational Biology, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0002-4552-8699
Charles O HaleDepartment of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0001-8119-5273
Thuy LaInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.
Zong-Yan LiuDepartment of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0002-9039-7843
Sarah J McMorrowInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.ORCID 0009-0003-1619-660X
Patrick MinxDonald Danforth Plant Science Center, St. Louis, Missouri 63132, USA.
Alyssa R PhillipsDepartment of Evolution and Ecology and Center for Population Biology, University of California, Davis, Davis CA 95616 USA.ORCID 0000-0001-8050-3051
Michael L SyringEcology, Evolution, and Organismal Biology, Iowa State University, Ames IA 50011 USA.ORCID 0000-0002-0193-4062
Travis WrightsmanDepartment of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0002-0904-6473
Jingjing ZhaiInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0002-1535-3103
Rémy PasquetDIADE, IRD, CIRAD, University of Montpellier, Montpellier, France.ORCID 0000-0003-3477-7013
Christine A McAllisterPrincipia College, Elsah, IL 62028 USA.ORCID 0000-0002-8632-6401
Simon T MalcomberNational Science Foundation, Alexandria, VA 22314 USA.
Paweena TraipermDepartment of Plant Science, Faculty of Science, Mahidol University, Ratchathewi, Bangkok, Thailand.
Daniel J LaytonIndiana University, Department of Biology, Bloomington, IN 47405 USA.
Jinshun ZhongSouth China Agricultural University, Guangzhou, Guangdong, 510642 China.
Denise E CostichInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.
R Kelly DaweDepartment of Genetics, University of Georgia, Athens, GA 30602 USA.
Kevin FenglerCorteva Agriscience, Johnson, IA 50131 USA.
Charlotte HarrisCorteva Agriscience, Johnson, IA 50131 USA.
Zach IrelanCorteva Agriscience, Johnson, IA 50131 USA.
Victor LlacaCorteva Agriscience, Johnson, IA 50131 USA.ORCID 0000-0003-4822-2924
Praveena ParakkalCorteva Agriscience, Johnson, IA 50131 USA.
Gina Zastrow-HayesCorteva Agriscience, Johnson, IA 50131 USA.
Margaret R WoodhouseUSDA-ARS, Corn Insects and Crop Genetics Research Unit, Ames, IA 50011 USA.ORCID 0000-0003-2164-8300
Ethalinda K CannonUSDA-ARS, Corn Insects and Crop Genetics Research Unit, Ames, IA 50011 USA.ORCID 0000-0002-0678-8754
John L PortwoodUSDA-ARS, Corn Insects and Crop Genetics Research Unit, Ames, IA 50011 USA.ORCID 0000-0002-6339-0881
Carson M AndorfUSDA-ARS, Corn Insects and Crop Genetics Research Unit, Ames, IA 50011 USA.ORCID 0000-0003-2380-6704
Patrice S AlbertDivision of Biological Sciences, University of Missouri, Columbia MO 65211 USA.
James A BirchlerDivision of Biological Sciences, University of Missouri, Columbia MO 65211 USA.ORCID 0000-0003-3643-2756
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724 USA.ORCID 0000-0002-3557-7219
Jeffrey Ross-IbarraDepartment of Evolution and Ecology and Center for Population Biology, University of California, Davis, Davis CA 95616 USA.ORCID 0000-0003-1656-4954
M Cinta RomayInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0001-9309-1586
Elizabeth A KelloggDonald Danforth Plant Science Center, St. Louis, Missouri 63132, USA.ORCID 0000-0003-1671-7447
Edward S BucklerInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850 USA.ORCID 0000-0002-3100-371X
Matthew B HuffordEcology, Evolution, and Organismal Biology, Iowa State University, Ames IA 50011 USA.ORCID 0000-0003-3945-1143

Funding

Computational methods for human genomic data integration: demography, selection,R01GM102192 · NIGMS · CORNELL UNIVERSITY · PI SIEPEL, ADAM CHARLES · 2013 to 2017
$1.7M
NIGMS NIH HHS R01 GM102192
6 · The paper itself

Abstract

Over the last 20 million years, the Andropogoneae tribe of grasses has evolved to dominate 17% of global land area. Domestication of these grasses in the last 10,000 years has yielded our most productive crops, including maize, sugarcane, and sorghum. The majority of Andropogoneae species, including maize, show a history of polyploidy - a condition that, while offering the evolutionary advantage of multiple gene copies, poses challenges to basic cellular processes, gene expression, and epigenetic regulation. Genomic studies of polyploidy have been limited by sparse sampling of taxa in groups with multiple polyploidy events. Here, we present 33 genome assemblies from 27 species, including chromosome-scale assemblies of maize relatives

Identifiers

PMID39896679
PMCPMC11785232

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.