Evidence map›Paper›PMID 39896678›Full record

ArticlebioRxiv : the preprint server for biology2025

Decaying and expanding Erk gradients process memory of skeletal size during zebrafish fin regeneration.

Ashley Rich, Ziqi Lu, Alessandro De Simone, Lucas Garcia, Jacqueline Janssen, Kazunori Ando, Jianhong Ou, Massimo Vergassola, Kenneth D Poss, Stefano Di Talia

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Ashley RichDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Ziqi LuDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Alessandro De SimoneDepartment of Genetics and Evolution, University of Geneva, 1211 Geneva, Switzerland.
Lucas GarciaDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Jacqueline JanssenDepartment of Physics, École Normale Supérieure, Paris 75005, France.
Kazunori AndoDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Jianhong OuDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Massimo VergassolaDepartment of Physics, École Normale Supérieure, Paris 75005, France.
Kenneth D PossDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.
Stefano Di TaliaDepartment of Cell Biology, Duke University Medical Center, Durham, NC, USA.ORCID 0000-0001-9758-7925

Funding

LIVE IMAGING OF BONE REGENERATION IN ZEBRAFISHR01AR076342 · NIAMS · DUKE UNIVERSITY · PI Stefano Di Talia, KENNETH D POSS · 2020 to 2026
$4.2M
Regulation of Appendage Regeneration in ZebrafishR01HD105033 · NICHD · MORGRIDGE INSTITUTE FOR RESEARCH, INC. · PI POSS, KENNETH D · 2021 to 2025
$2.0M
Quantitative dissection of the events that encode bone size and shape during regenerationF32HD107853 · NICHD · DUKE UNIVERSITY · PI BAKER, ASHLEY RICH · 2022 to 2024
$214k
NIAMS NIH HHS R01 AR076342NICHD NIH HHS F32 HD107853NICHD NIH HHS R01 HD105033
6 · The paper itself

Abstract

Regeneration of an amputated salamander limb or fish fin restores pre-injury size and structure, illustrating the phenomenon of positional memory. Although appreciated for centuries, the identity of position-dependent cues and how they control tissue growth are not resolved. Here, we quantify Erk signaling events in whole populations of osteoblasts during zebrafish fin regeneration. We find that osteoblast Erk activity is dependent on Fgf receptor signaling and organized into millimeter-long gradients that extend from the distal tip to the amputation site. Erk activity scales with the amount of tissue amputated, predicts the likelihood of osteoblast cycling, and predicts the size of regenerated skeletal structures. Mathematical modeling suggests gradients are established by the transient deposition of long-lived ligands that are transported by tissue growth. This concept is supported by the observed scaling of expression of the essential epidermal ligand

Identifiers

PMID39896678
PMCPMC11785216

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.