Evidence map›Paper›PMID 39896672›Full record

ArticlebioRxiv : the preprint server for biology2025

Single-cell decoding of human islet cell type-specific alterations in type 2 diabetes reveals converging genetic- and state-driven

Khushdeep Bandesh, Efthymios Motakis, Siddhi Nargund, Romy Kursawe, Vijay Selvam, Redwan M Bhuiyan, Giray Naim Eryilmaz, Sai Nivedita Krishnan, Cassandra N Spracklen, Duygu Ucar and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Khushdeep BandeshThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.ORCID 0000-0002-5057-7313
Efthymios MotakisThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.
Siddhi NargundThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.
Romy KursaweThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.ORCID 0000-0001-6509-1917
Vijay SelvamThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.ORCID 0009-0006-4597-3369
Redwan M BhuiyanThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.ORCID 0000-0001-9866-905X
Giray Naim EryilmazThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.
Sai Nivedita KrishnanThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.
Cassandra N SpracklenDepartment of Biostatistics and Epidemiology, University of Massachusetts Amherst, Amherst, MA, USA.ORCID 0000-0003-3590-7182
Duygu UcarThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.
Michael L StitzelThe Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT 06032 USA.ORCID 0000-0001-5630-559X

Funding

The Human Islet Distribution Coordinating Center (UC4)UC4DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI EVANS-MOLINA, CARMELLA, NILAND, JOYCE CAROL · 2012 to 2017
$25.6M
Genetic programming of human islet metabolic and endoplasmic reticulum (ER) stress responses in diabetesR01DK118011 · NIDDK · JACKSON LABORATORY · PI Michael Lee Stitzel · 2021 to 2026
$4.9M
Type 2 diabetes risk variant effects on mitochondrial (patho)physiologyR01DK136671 · NIDDK · JACKSON LABORATORY · PI Scott Soleimanpour, Michael Lee Stitzel · 2023 to 2026
$3.0M
Regulation and Function of the Type 2 Diabetes-Associated C2CD4A/B LocusR01DK117137 · NIDDK · JACKSON LABORATORY · PI STITZEL, MICHAEL LEE · 2019 to 2023
$2.1M
Dissecting the roles of type 2 diabetes-associated variants and effector genes in islet endoplasmic reticulum stress responseF30DK130582 · NIDDK · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI BHUIYAN, REDWAN · 2022 to 2025
$194k
NIDDK NIH HHS F30 DK130582NIDDK NIH HHS R01 DK117137NIDDK NIH HHS R01 DK118011NIDDK NIH HHS R01 DK136671NIDDK NIH HHS UC4 DK098085
6 · The paper itself

Abstract

Pancreatic islets maintain glucose homeostasis through coordinated action of their constituent endocrine and affiliate cell types and are central to type 2 diabetes (T2D) genetics and pathophysiology. Our understanding of robust human islet cell type-specific alterations in T2D remains limited. Here, we report comprehensive single cell transcriptome profiling of 245,878 human islet cells from a 48-donor cohort spanning non-diabetic (ND), pre-diabetic (PD), and T2D states, identifying 14 distinct cell types detected in every donor from each glycemic state. Cohort analysis reveals ~25-30% loss of functional beta cell mass in T2D vs. ND or PD donors resulting from (1) reduced total beta cell numbers/proportions and (2) reciprocal loss of 'high function' and gain of senescent

Identifiers

PMID39896672
PMCPMC11785113

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.