Evidence map›Paper›PMID 39896641›Full record

ArticlebioRxiv : the preprint server for biology2025

History shapes regulatory and evolutionary responses to tigecycline in strains of

Alecia B Rokes, Alfonso Santos-Lopez, Vaughn S Cooper

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Alecia B RokesUniversity of Pittsburgh, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, USA.ORCID 0000-0001-9496-0296
Alfonso Santos-LopezDepartment of Molecular Biology, Autonomous University of Madrid, Madrid, Spain.ORCID 0000-0002-9163-9947
Vaughn S CooperUniversity of Pittsburgh, Department of Microbiology and Molecular Genetics, Pittsburgh, PA, USA.ORCID 0000-0001-7726-0765

Funding

Drug resistance enablers and their role in antibiotic treatment failureU19AI158076 · NIAID · BROAD INSTITUTE, INC. · PI VAN OPIJNEN, TIM · 2022 to 2025
$10.0M
Using strain history to improve prediction of the evolution of antimicrobial resistance in Acinetobacter baumanniiF31AI172279 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ROKES, ALECIA BARBARA · 2023 to 2024
$97k
NIAID NIH HHS F31 AI172279NIAID NIH HHS U19 AI158076
6 · The paper itself

Abstract

Evolutionary history encompasses genetic and phenotypic bacterial differences, but the extent to which history influences drug response and antimicrobial resistance (AMR) adaptation is unclear. Historical contingencies arise when elements from an organism's past leave lasting effects on the genome, altering the paths available for adaptation. We utilize strains isolated before and after widespread antibiotic use to study the impact of deep historical differences shaped by decades of evolution in varying antibiotic and host pressures. We evaluated these effects by comparing immediate and adaptive responses of two strains of

Identifiers

PMID39896641
PMCPMC11785199

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.