Evidence map›Paper›PMID 39896579›Full record

ArticlebioRxiv : the preprint server for biology2025

Kiwa is a bacterial membrane-embedded defence supercomplex activated by phage-induced membrane changes.

Zhiying Zhang, Thomas C Todeschini, Yi Wu, Roman Kogay, Ameena Naji, Joaquin Cardenas Rodriguez, Rupavidhya Mondi, Daniel Kaganovich, David W Taylor, Jack P K Bravo and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Zhiying ZhangStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Thomas C TodeschiniSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.
Yi WuSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.
Roman KogayNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Ameena NajiSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.
Joaquin Cardenas RodriguezSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.
Rupavidhya MondiSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.
Daniel KaganovichSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.
David W TaylorDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, 78712, USA.ORCID 0000-0002-6198-1194
Jack P K BravoDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, 78712, USA.
Marianna TeplovaStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Triana AmenSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Dinshaw J PatelStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Franklin L NobregaSchool of Biological Sciences, University of Southampton, SO17 1BJ Southampton, UK.ORCID 0000-0002-8238-1083

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Vivian Stojanoff · 2019 to 2026
$38.6M
Imaging macromolecular machines in gene regulationR35GM138348 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI TAYLOR, DAVID W · 2020 to 2024
$1.9M
Structure-Activity Based Mechanistic Insights into Cleavage Chemistry by Self-Cleaving Nucleolytic RibozymesR01GM145888 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI PATEL, DINSHAW J · 2022 to 2025
$1.3M
NCI NIH HHS P30 CA008748NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R01 GM145888NIGMS NIH HHS R35 GM138348NIGMS NIH HHS U24 GM129539
6 · The paper itself

Abstract

Bacteria and archaea deploy diverse, sophisticated defence systems to counter virus infection, yet many immunity mechanisms remain poorly understood. Here, we characterise the Kiwa defence system as a membrane-associated supercomplex that senses changes in the membrane induced by phage infection and plasmid conjugation. This supercomplex, comprising KwaA tetramers bound to KwaB dimers, as its basic repeating unit, detects structural stress via KwaA, activating KwaB, which binds ejected phage DNA through its DUF4868 domain, stalling phage DNA replication forks and thus disrupting replication and late transcription. We show that phage-encoded DNA mimic protein Gam, which inhibits RecBCD, also targets Kiwa through KwaB recognition. However, Gam binding to one defence system precludes its inhibition of the other. These findings reveal a distinct mechanism of bacterial immune coordination, where sensing of membrane disruptions and inhibitor partitioning enhance protection against phages and plasmids.

Indexed as

DNA bindingDNA mimicKiwalate transcriptionmembrane disruptionsphage defenceRecBCDreplication forktransmembrane supercomplex

Identifiers

PMID39896579
PMCPMC11785009

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.