Evidence map›Paper›PMID 39896520›Full record

ArticlebioRxiv : the preprint server for biology2025

Exact linear theory of perturbation response in a space- and feature-dependent cortical circuit model.

Ho Yin Chau, Kenneth D Miller, Agostina Palmigiano

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Ho Yin ChauCenter for Theoretical Neuroscience, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY.
Kenneth D MillerCenter for Theoretical Neuroscience, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY.
Agostina PalmigianoCenter for Theoretical Neuroscience, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY.

Funding

Validating Theoretical Models with Neurophysiology and OptogeneticsU19NS107613 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ADESNIK, HILLEL · 2018 to 2022
$16.7M
Vision Sciences Training GrantT32EY013933 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Carol A. Mason, CAROL M TROY · 2001 to 2026
$5.3M
Circuitry underlying response summation in mouse and primate: Theory and experimentU01NS108683 · NINDS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI BRUNEL, NICOLAS, MILLER, KENNETH D · 2018 to 2020
$2.8M
CRCNS: Theory-guided studies of cortical mechanisms of multi-input integrationR01EY029999 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MILLER, KENNETH D, VAN HOOSER, STEPHEN D · 2018 to 2020
$1.2M
NEI NIH HHS R01 EY029999NEI NIH HHS T32 EY013933NINDS NIH HHS U01 NS108683NINDS NIH HHS U19 NS107613
6 · The paper itself

Abstract

What are the principles that govern the responses of cortical networks to their inputs and the emergence of these responses from recurrent connectivity? Recent experiments have probed these questions by measuring cortical responses to two-photon optogenetic perturbations of single cells in the mouse primary visual cortex. A robust theoretical framework is needed to determine the implications of these responses for cortical recurrence. Here we propose a novel analytical approach: a formulation of the dependence of cell-type-specific connectivity on spatial distance that yields an exact solution for the linear perturbation response of a model with multiple cell types and space- and feature-dependent connectivity. Importantly and unlike previous approaches, the solution is valid in regimes of strong as well as weak intra-cortical coupling. Analysis reveals the structure of connectivity implied by various features of single-cell perturbation responses, such as the surprisingly narrow spatial radius of nearby excitation beyond which inhibition dominates, the number of transitions between mean excitation and inhibition thereafter, and the dependence of these responses on feature preferences. Comparison of these results to existing optogenetic perturbation data yields constraints on cell-type-specific connection strengths and their tuning dependence. Finally, we provide experimental predictions regarding the response of inhibitory neurons to single-cell perturbations and the modulation of perturbation response by neuronal gain.

Indexed as

Mouse Primary Visual CortexOptogenetic perturbationRecurrent neural networks

Identifiers

PMID39896520
PMCPMC11785077

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.