Evidence map›Paper›PMID 39896515›Full record

ArticlebioRxiv : the preprint server for biology2025

Tobacco smoke carcinogens exacerbate APOBEC mutagenesis and carcinogenesis.

Cameron Durfee, Erik N Bergstrom, Marcos Díaz-Gay, Yufan Zhou, Nuri Alpay Temiz, Mahmoud A Ibrahim, Shuvro P Nandi, Yaxi Wang, Xingyu Liu, Christopher D Steele and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Cameron DurfeeDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas, USA, 78229.ORCID 0000-0002-8130-4270
Erik N BergstromDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA, 92093.ORCID 0000-0001-7740-022X
Marcos Díaz-GayDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA, 92093.ORCID 0000-0003-0658-0467
Yufan ZhouDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas, USA, 78229.
Nuri Alpay TemizInstitute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA, 55455.ORCID 0000-0003-1416-3639
Mahmoud A IbrahimDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas, USA, 78229.ORCID 0000-0003-3346-6459
Shuvro P NandiDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA, 92093.ORCID 0000-0003-4855-4697
Yaxi WangDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas, USA, 78229.
Xingyu LiuDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas, USA, 78229.
Christopher D SteeleDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA, 92093.
Joshua ProehlDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas, USA, 78229.ORCID 0000-0003-2685-1682
Rachel I VogelMasonic Cancer Center, University of Minnesota, Minneapolis, Minnesota, USA, 55455.
Prokopios P ArgyrisDivision of Oral and Maxillofacial Pathology, College of Dentistry, Ohio State University, Columbus, Ohio, USA, 43210.ORCID 0000-0002-5965-6181
Ludmil B AlexandrovDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA, 92093.ORCID 0000-0003-3596-4515
Reuben S HarrisDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, Texas, USA, 78229.ORCID 0000-0002-9034-9112

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Targeting Polθ to Overcome PARP Inhibitor Resistance in Homologous Recombination Deficient Breast CancerP50CA247749 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Sarat Chandarlapaty, Simon N. Powell · 2020 to 2026
$16.3M
PROJECT 3 – BIOLOGY OF DNA DEAMINASES IN CANCERP01CA234228 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Michael Allen Carpenter · 2019 to 2026
$14.5M
Role of hypernutrition and metabolic stress in non-alcoholic steatohepatitis (NASH) driven hepatocellular carcinoma (HCC)P01CA281819 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Michael Karin · 2024 to 2026
$9.2M
Detecting Mutational Signatures of Environmental Mutagens in Heathy Individuals for Personalized Cancer PreventionR01ES032547 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ALEXANDROV, LUDMIL B · 2021 to 2025
$3.4M
Mapping immuno-genomic drivers of the head and neck precancer invasive-disease transitionU01CA290479 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ludmil B Alexandrov, Jorge Silvio Gutkind · 2023 to 2026
$3.1M
Comprehensive identification of germline-somatic interactionsR01CA269919 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ludmil B Alexandrov, Hannah Kathryn Carter · 2022 to 2026
$2.2M
Illumina NovaSeq 6000 Sequencing SystemS10OD030311 · OD · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAI, ZHAO · 2021 to 2021
$600k
NCI NIH HHS P01 CA234228NCI NIH HHS P01 CA281819NCI NIH HHS P30 CA054174NCI NIH HHS P50 CA247749NCI NIH HHS R01 CA269919NCI NIH HHS U01 CA290479NIEHS NIH HHS R01 ES032547NIH HHS S10 OD030311
6 · The paper itself

Abstract

Mutations in somatic cells are inflicted by both extrinsic and intrinsic sources and contribute over time to cancer. Tobacco smoke contains chemical carcinogens that have been causatively implicated with cancers of the lung and head & neck

Indexed as

APOBEC mutagenesisbulky DNA adductscancer development and progressionnucleotide excision repairtobacco carcinogens

Identifiers

PMID39896515
PMCPMC11785121

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.