Evidence map›Paper›PMID 39894882›Full record

ArticleNPJ digital medicine2025

3D convolutional deep learning for nonlinear estimation of body composition from whole body morphology.

Isaac Y Tian, Jason Liu, Michael C Wong, Nisa N Kelly, Yong E Liu, Andrea K Garber, Steven B Heymsfield, Brian Curless, John A Shepherd

Abstract read
In one paragraph

Article in NPJ digital medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Isaac Y TianPaul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, USA. iytian@cs.washington.edu.ORCID http://orcid.org/0000-0003-4975-6290
Jason LiuPaul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, USA.
Michael C WongUniversity of Hawaii Cancer Center, University of Hawaii - Manoa, Honolulu, HI, USA.ORCID http://orcid.org/0000-0003-2392-9253
Nisa N KellyUniversity of Hawaii Cancer Center, University of Hawaii - Manoa, Honolulu, HI, USA.
Yong E LiuUniversity of Hawaii Cancer Center, University of Hawaii - Manoa, Honolulu, HI, USA.
Andrea K GarberUCSF School of Medicine, University of California-San Francisco, San Francisco, CA, USA.
Steven B HeymsfieldPennington Biomedical Research Center, Louisiana State University, Baton Rouge, LA, USA.ORCID http://orcid.org/0000-0003-1127-9425
Brian CurlessPaul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA, USA.
John A ShepherdUniversity of Hawaii Cancer Center, University of Hawaii - Manoa, Honolulu, HI, USA.

Funding

University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI GERTRAUD MASKARINEC · 1996 to 2026
$56.2M
ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Elizabeth Austen Lawson, Takara Leah Stanley · 1994 to 2026
$31.6M
Research BaseP30DK072476 · NIDDK · LSU PENNINGTON BIOMEDICAL RESEARCH CTR · PI Sujoy Ghosh · 2005 to 2026
$26.5M
Multi-center Randomized Controlled Trial of Refeeding in Anorexia NervosaR01HD082166 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GARBER, ANDREA K · 2015 to 2025
$5.7M
Shape up! KidsR01DK111698 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI HEYMSFIELD, STEVEN, SHEPHERD, JOHN ALAN · 2017 to 2021
$3.3M
Optical Body Composition and Health AssessmentR01DK109008 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI HEYMSFIELD, STEVEN, SHEPHERD, JOHN ALAN · 2016 to 2020
$3.2M
NCI NIH HHS P30 CA071789NICHD NIH HHS R01 HD082166NIDDK NIH HHS P30 DK040561NIDDK NIH HHS P30 DK072476NIDDK NIH HHS R01 DK109008NIDDK NIH HHS R01 DK111698U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) R01HD082166
6 · The paper itself

Abstract

Body composition prediction from 3D optical imagery has previously been studied with linear algorithms. In this study, we present a novel application of deep 3D convolutional graph networks and nonlinear Gaussian process regression for human body shape parameterization and body composition estimation. We trained and tested linear and nonlinear models with ablation studies on a novel ensemble body shape dataset containing 4286 scans. Nonlinear GPR produced up to a 20% reduction in prediction error and up to a 30% increase in precision over linear regression for both sexes in 10 tested body composition variables. Deep shape features produced 6-8% reduction in prediction error over linear PCA features for males only, and a 4-14% reduction in precision error for both sexes. All coefficients of determination (R

Identifiers

PMID39894882
PMCPMC11788428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.