Evidence map›Paper›PMID 39894796›Full record

ArticleGut microbes2025

AhR Activation Transcriptionally Induces Anti-Microbial Peptide Alpha-Defensin 1 Leading to Reversal of Gut Microbiota Dysbiosis and Colitis.

Manikandan Palrasu, Khadija Kakar, Amarnath Marudamuthu, Hamida Hamida, Shruthi Thada, Yin Zhong, Shanieka Staley, Philip Brandon Busbee, Jie Li, Monica Garcia-Buitrago and 2 more

Abstract read
In one paragraph

Article in Gut microbes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Manikandan PalrasuDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.ORCID 0009-0009-4325-7045
Khadija KakarDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Amarnath MarudamuthuDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Hamida HamidaDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Shruthi ThadaDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Yin ZhongDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Shanieka StaleyDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Philip Brandon BusbeeDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Jie LiDepartment of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, USA.ORCID 0000-0001-7977-6749
Monica Garcia-BuitragoDepartment of Pathology, University of Miami Miller School of Medicine, Miami, Florida, USA.
Mitzi NagarkattiDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.
Prakash NagarkattiDepartment of Pathology, Microbiology and Immunology, University of South Carolina School of Medicine, Columbia, South Carolina, USA.ORCID 0000-0003-2663-0759

Funding

Targeting early ceramide elevation in pre-symptomatic eczemaP20GM103641 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI ENOS, REILLY, NAGARKATTI, PRAKASH S · 2012 to 2023
$20.7M
Flow Cytometry and Cell Analysis CoreP30GM154631 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI Mitzi Nagarkatti, Prakash S Nagarkatti · 2024 to 2026
$4.5M
Role of the environmental sensor, AhR on colitisR01AI160896 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NAGARKATTI, MITZI, NAGARKATTI, PRAKASH S · 2021 to 2025
$2.6M
Epigenetic mechanisms in Transgenerational Effects of an Environmental PollutantR01ES030144 · NIEHS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NAGARKATTI, MITZI, NAGARKATTI, PRAKASH S · 2019 to 2023
$2.5M
Epigenetic Mechanisms of T Cell Dysregulation in PTSDR01AI129788 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NAGARKATTI, MITZI · 2017 to 2021
$2.4M
AhR ligands in epigenetic dysregulation of T cellsR01AI123947 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NAGARKATTI, MITZI, NAGARKATTI, PRAKASH S · 2017 to 2021
$1.8M
NIAID NIH HHS R01 AI123947NIAID NIH HHS R01 AI129788NIAID NIH HHS R01 AI160896NIEHS NIH HHS R01 ES030144NIGMS NIH HHS P20 GM103641NIGMS NIH HHS P30 GM154631
6 · The paper itself

Abstract

Alpha-defensin 1 is a small antimicrobial peptide that acts as the first line of defense against pathogens. It is induced following microbial cues and inflammatory signals in neutrophils and Paneth cells in the small intestine, which suggests that it plays a role in microbial homeostasis in the gut. The gut microbial products also serve as ligands for the aryl hydrocarbon receptor (AhR), an environmental sensor. In the current study, we investigated if there is any crosstalk between AhR and alpha-defensin 1. Interestingly, we found a positive correlation between AhR and alpha-defensin 1 protein levels in ileal tissues from active Crohn's' (CD) patients and epithelial cells (IECs) from multiple models of murine colitis.

Indexed as

alpha-DefensinsBasic Helix-Loop-Helix ProteinsColitisDysbiosisGastrointestinal MicrobiomeReceptors, Aryl HydrocarbonAnimalsDisease Models, AnimalEpithelial CellsHumansIntestinal MucosaMiceMice, Inbred C57BLAHR protein, humanalpha-DefensinsBasic Helix-Loop-Helix ProteinsReceptors, Aryl Hydrocarboncolitiscrohn’s diseaseinflammatory bowel diseasemicrobiomeThe aryl hydrocarbon receptorα-defensin 1

Identifiers

PMID39894796
PMCPMC11792800

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.