Evidence map›Paper›PMID 39894213›Full record

ArticleMolecular metabolism2025

Hypoxia-inducible factor 1α is required to establish the larval glycolytic program in Drosophila melanogaster.

Yasaman Heidarian, Tess D Fasteen, Liam Mungcal, Kasun Buddika, Nader H Mahmoudzadeh, Travis Nemkov, Angelo D'Alessandro, Jason M Tennessen

Abstract read
In one paragraph

Article in Molecular metabolism, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Structural modeling supports an interaction between thebioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Yasaman HeidarianDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Tess D FasteenDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Liam MungcalDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Kasun BuddikaDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Nader H MahmoudzadehDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Travis NemkovDepartment of Biochemistry and Molecular Genetics, Anschutz Medical Campus, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Angelo D'AlessandroDepartment of Biochemistry and Molecular Genetics, Anschutz Medical Campus, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Jason M TennessenDepartment of Biology, Indiana University, Bloomington, IN 47405, USA; Member, Melvin and Bren Simon Cancer Center, Indianapolis, IN 46202, USA. Electronic address: jtenness@iu.edu.

Funding

Resource Project CoreU41HG000739 · NHGRI · HARVARD UNIVERSITY · PI PERRIMON, NORBERT · 2014 to 2022
$32.3M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
DROSOPHILA GENOMICS RESOURCE CENTERP40OD010949 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Andrew Zelhof · 2012 to 2026
$9.4M
A Drosophila Model for the Regulation of Aerobic GlycolysisR35GM119557 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Jason Michael Tennessen · 2016 to 2026
$4.7M
NHGRI NIH HHS U41 HG000739NIGMS NIH HHS R35 GM119557NIH HHS P40 OD010949NIH HHS P40 OD018537
6 · The paper itself

Abstract

objectivesThe rapid growth that occurs during Drosophila larval development requires a dramatic rewiring of central carbon metabolism to support biosynthesis. Larvae achieve this metabolic state, in part, by coordinately up-regulating the expression of genes involved in carbohydrate metabolism. The resulting metabolic program exhibits hallmark characteristics of aerobic glycolysis and establishes a physiological state that supports growth. To date, the only factor known to activate the larval glycolytic program is the Drosophila Estrogen-Related Receptor (dERR). However, dERR is dynamically regulated during the onset of this metabolic switch, indicating that other factors must be involved. Here we examine the possibility that the Drosophila ortholog of Hypoxia inducible factor 1α (Hif1α) is also required to activate the larval glycolytic program.

methodsCRISPR/Cas9 was used to generate new loss-of-function alleles in the Drosophila gene similar (sima), which encodes the sole fly ortholog of Hif1α. The resulting mutant strains were analyzed using a combination of metabolomics and RNAseq for defects in carbohydrate metabolism.

resultsOur studies reveal that sima mutants fail to activate aerobic glycolysis and die during larval development with metabolic phenotypes that mimic those displayed by dERR mutants. Moreover, we demonstrate that dERR and Sima/Hif1α protein accumulation is mutually dependent, as loss of either transcription factor results in decreased abundance of the other protein.

conclusionsThese findings demonstrate that Sima/HIF1α is required during embryogenesis to coordinately up-regulate carbohydrate metabolism in preparation for larval growth. Notably, our study also reveals that the Sima/HIF1α-dependent gene expression program shares considerable overlap with that observed in dERR mutant, suggesting that Sima/HIF1α and dERR cooperatively regulate embryonic and larval glycolytic gene expression.

Indexed as

Drosophila melanogasterDrosophila ProteinsGlycolysisHypoxia-Inducible Factor 1, alpha SubunitAnimalsCarbohydrate MetabolismCRISPR-Cas SystemsDNA-Binding ProteinsGene Expression Regulation, DevelopmentalLarvaDNA-Binding ProteinsDrosophila ProteinsHypoxia-Inducible Factor 1, alpha SubunitSima protein, DrosophilaDrosophila melanogasterEstrogen-Related ReceptorGlycolysisHypoxia-inducible factor 1αWarburg effect

Identifiers

PMID39894213
PMCPMC11869853

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.