Evidence map›Paper›PMID 39891798›Full record

ArticleMagma (New York, N.Y.)2025

Deep learning initialized compressed sensing (Deli-CS) in volumetric spatio-temporal subspace reconstruction.

S Sophie Schauman, Siddharth S Iyer, Christopher M Sandino, Mahmut Yurt, Xiaozhi Cao, Congyu Liao, Natthanan Ruengchaijatuporn, Itthi Chatnuntawech, Elizabeth Tong, Kawin Setsompop

Abstract read
In one paragraph

Article in Magma (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

S Sophie SchaumanDepartment of Radiology, Stanford University, Stanford, CA, USA. sophie.schauman.academic@gmail.com.ORCID http://orcid.org/0000-0002-3744-2553
Siddharth S IyerDepartment of Radiology, Stanford University, Stanford, CA, USA.
Christopher M SandinoDepartment of Electrical Engineering, Stanford University, Stanford, CA, USA.
Mahmut YurtDepartment of Electrical Engineering, Stanford University, Stanford, CA, USA.
Xiaozhi CaoDepartment of Radiology, Stanford University, Stanford, CA, USA.
Congyu LiaoDepartment of Radiology, Stanford University, Stanford, CA, USA.
Natthanan RuengchaijatupornCenter of Excellence in Computational Molecular Biology, Chulalongkorn University, Bangkok, Thailand.
Itthi ChatnuntawechNational Nanotechnology Center, National Science and Technology Development Agency, Pathum Thani, Thailand.
Elizabeth TongDepartment of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA.
Kawin SetsompopDepartment of Radiology, Stanford University, Stanford, CA, USA.

Funding

MRI CORTICOGRAPHY: DEVELOPING NEXT GENERATION MICROSCALE HUMAN CORTEX MRI SCANNERU01EB025162 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI FEINBERG, DAVID ALAN, LIU, CHUNLEI · 2017 to 2021
$13.4M
Training and Dissemination CoreP41EB030006 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI Susie Yi Huang · 2020 to 2026
$10.9M
Next generation in-vivo diffusion imaging at submillimeter resolutionR01MH116173 · NIMH · STANFORD UNIVERSITY · PI Yogesh Rathi, Kawin Setsompop · 2018 to 2026
$6.2M
fMRI Technologies for Imaging at the Limit of Biological Spatiotemporal Resolution: Administrative SupplementR01EB019437 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI POLIMENI, JONATHAN RIZZO, SETSOMPOP, KAWIN · 2015 to 2024
$5.5M
Rapid MRI acquisition for pediatric low-grade gliomasR01EB020613 · NIBIB · STANFORD UNIVERSITY · PI SETSOMPOP, KAWIN · 2016 to 2019
$2.5M
NIBIB NIH HHS P41 EB030006NIH HHS P41EB030006NIH HHS R01EB019437NIH HHS R01EB020613NIH HHS R01MH116173NIH HHS U01EB025162
6 · The paper itself

Abstract

objectSpatio-temporal MRI methods offer rapid whole-brain multi-parametric mapping, yet they are often hindered by prolonged reconstruction times or prohibitively burdensome hardware requirements. The aim of this project is to reduce reconstruction time using deep learning. MATERIALS AND

methodsThis study focuses on accelerating the reconstruction of volumetric multi-axis spiral projection MRF, aiming for whole-brain T1 and T2 mapping, while ensuring a streamlined approach compatible with clinical requirements. To optimize reconstruction time, the traditional method is first revamped with a memory-efficient GPU implementation. Deep Learning Initialized Compressed Sensing (Deli-CS) is then introduced, which initiates iterative reconstruction with a DL-generated seed point, reducing the number of iterations needed for convergence.

resultsThe full reconstruction process for volumetric multi-axis spiral projection MRF is completed in just 20 min compared to over 2 h for the previously published implementation. Comparative analysis demonstrates Deli-CS's efficiency in expediting iterative reconstruction while maintaining high-quality results. DISCUSSION: By offering a rapid warm start to the iterative reconstruction algorithm, this method substantially reduces processing time while preserving reconstruction quality. Its successful implementation paves the way for advanced spatio-temporal MRI techniques, addressing the challenge of extensive reconstruction times and ensuring efficient, high-quality imaging in a streamlined manner.

Indexed as

Data CompressionDeep LearningImage Processing, Computer-AssistedMagnetic Resonance ImagingAlgorithmsBrainBrain MappingHumansImaging, Three-DimensionalPhantoms, ImagingSpatio-Temporal AnalysisAlgorithmsBrainDeep learningImage processing (computer-assisted)Magnetic resonance imaging

Identifiers

PMID39891798
PMCPMC11914339

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.