Evidence map›Paper›PMID 39891387›Full record

ArticleBiophysical journal2025

Growth of nonmotile stress-responsive bacteria in 3D colonies under confining pressure.

Samaneh Rahbar, Farshid Mohammad-Rafiee, Ludger Santen, Reza Shaebani

Abstract read
In one paragraph

Article in Biophysical journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Samaneh RahbarDepartment of Theoretical Physics and Center for Biophysics, Saarland University, Saarbrücken, Germany.
Farshid Mohammad-RafieeDepartment of Physics, Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, Iran; Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania.
Ludger SantenDepartment of Theoretical Physics and Center for Biophysics, Saarland University, Saarbrücken, Germany.
Reza ShaebaniDepartment of Theoretical Physics and Center for Biophysics, Saarland University, Saarbrücken, Germany. Electronic address: shaebani@lusi.uni-sb.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We numerically study three-dimensional colonies of nonmotile stress-responsive bacteria growing under confining isotropic pressure in a nutrient-rich environment. We develop a novel simulation method to demonstrate how imposing an external pressure leads to a denser aggregate and strengthens the mechanical interactions between bacteria. Unlike rigid confinements that prevent bacterial growth, confining pressure acts as a soft constraint and allows colony expansion with a nearly linear long-term population growth and colony size. Enhancing the mechanosensitivity reduces instantaneous bacterial growth rates and the overall colony size, though its impact is modest compared to pressure for our studied set of biologically relevant parameter values. The doubling time grows exponentially at low mechanosensitivity or pressure in our bacterial growth model. We provide an analytical estimate of the doubling time and develop a population dynamics model consistent with our simulations. Our findings align with previous experimental results for E. coli colonies under pressure. Understanding the growth dynamics of stress-responsive bacteria under mechanical stresses provides insight into their adaptive response to varying environmental conditions.

Indexed as

Escherichia coliModels, BiologicalPressureStress, MechanicalStress, Physiological

Identifiers

PMID39891387
PMCPMC11897547

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.