Evidence map›Paper›PMID 39890776›Full record

ArticleNature communications2025

De novo design of protein minibinder agonists of TLR3.

Chloe S Adams, Hyojin Kim, Abigail E Burtner, Dong Sun Lee, Craig Dobbins, Cameron Criswell, Brian Coventry, Adri Tran-Pearson, Ho Min Kim, Neil P King

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Journal of the American Chemical Society · 2025
    Article
  4. Article
  5. Structural immunotherapy: Harnessing chemical design to build powerful next-generation therapeutics.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Review
  7. Review
  8. Self-assembled proteomimetic (SAP) with antibody-like binding from short PNA-peptide conjugates.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Chloe S AdamsInstitute for Protein Design, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0000-0002-5896-6890
Hyojin KimCenter for Biomolecular & Cellular Structure, Institute for Basic Science (IBS), Daejeon, 34126, South Korea.
Abigail E BurtnerInstitute for Protein Design, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0000-0002-2401-2044
Dong Sun LeeCenter for Biomolecular & Cellular Structure, Institute for Basic Science (IBS), Daejeon, 34126, South Korea.
Craig DobbinsInstitute for Protein Design, University of Washington, Seattle, WA, 98195, USA.
Cameron CriswellInstitute for Protein Design, University of Washington, Seattle, WA, 98195, USA.
Brian CoventryInstitute for Protein Design, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0000-0002-6910-6255
Adri Tran-PearsonInstitute for Protein Design, University of Washington, Seattle, WA, 98195, USA.
Ho Min KimCenter for Biomolecular & Cellular Structure, Institute for Basic Science (IBS), Daejeon, 34126, South Korea. hm_kim@kaist.ac.kr.ORCID http://orcid.org/0000-0003-0029-3643
Neil P KingInstitute for Protein Design, University of Washington, Seattle, WA, 98195, USA. neilking@uw.edu.ORCID http://orcid.org/0000-0002-2978-4692

Funding

TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Gates Foundation INV-010680Gates Foundation INV-043758NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

Toll-like Receptor 3 (TLR3) is a pattern recognition receptor that initiates antiviral immune responses upon binding double-stranded RNA (dsRNA). Several nucleic acid-based TLR3 agonists have been explored clinically as vaccine adjuvants in cancer and infectious disease, but present substantial manufacturing and formulation challenges. Here, we use computational protein design to create novel miniproteins that bind to human TLR3 with nanomolar affinities. Cryo-EM structures of two minibinders in complex with TLR3 reveal that they bind the target as designed, although one partially unfolds due to steric competition with a nearby N-linked glycan. Multivalent forms of both minibinders induce NF-κB signaling in TLR3-expressing cell lines, demonstrating that they may have therapeutically relevant biological activity. Our work provides a foundation for the development of specific, stable, and easy-to-formulate protein-based agonists of TLRs and other pattern recognition receptors.

Indexed as

Toll-Like Receptor 3Cryoelectron MicroscopyHEK293 CellsHumansNF-kappa BProtein BindingRNA, Double-StrandedSignal TransductionNF-kappa BRNA, Double-StrandedTLR3 protein, humanToll-Like Receptor 3

Identifiers

PMID39890776
PMCPMC11785957

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.