Evidence map›Paper›PMID 39889710›Full record

ArticleCell reports. Medicine2025

Integrative proteo-transcriptomic characterization of advanced fibrosis in chronic liver disease across etiologies.

Hong Yang, Dila Atak, Meng Yuan, Mengzhen Li, Ozlem Altay, Elif Demirtas, Ibrahim Batuhan Peltek, Burge Ulukan, Buket Yigit, Tarik Sipahioglu and 14 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Unifying and unique roles of non-coding RNA biomarkers in liver and heart fibrosis.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. PlasmaHepatology forum · 2026
    Article
  8. Review
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Hong YangScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Dila AtakDepartment of Gastroenterology and Hepatology, School of Medicine, Koç University, İstanbul 34010, Turkiye.
Meng YuanScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Mengzhen LiScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Ozlem AltayScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Elif DemirtasSchool of Medicine, Koç University, Istanbul 34450, Turkiye.
Ibrahim Batuhan PeltekSchool of Medicine, Koç University, Istanbul 34450, Turkiye.
Burge UlukanDepartment of Gastroenterology and Hepatology, School of Medicine, Koç University, İstanbul 34010, Turkiye.
Buket YigitDepartment of Gastroenterology and Hepatology, School of Medicine, Koç University, İstanbul 34010, Turkiye.
Tarik SipahiogluDepartment of Gastroenterology and Hepatology, School of Medicine, Koç University, İstanbul 34010, Turkiye.
María Bueno ÁlvezScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Lingqi MengScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Bayram YükselSZAOMICS Biotechnology R&D, İstanbul 34010, Turkiye.
Hasan TurkezDepartment of Medical Biology, Faculty of Medicine, Atatürk University, Erzurum 25240, Turkiye.
Hale KirimliogluDepartment of Pathology, School of Medicine, Acibadem Mehmet Ali Aydinlar University Istanbul 34752, Turkiye.
Burcu SakaDepartment of Pathology, School of Medicine, Koç University, Istanbul 34010, Turkiye.
Cihan YurdaydinDepartment of Gastroenterology and Hepatology, School of Medicine, Koç University, İstanbul 34010, Turkiye.
Murat AkyildizDepartment of Gastroenterology and Hepatology, School of Medicine, Koç University, İstanbul 34010, Turkiye.
Murat DayangacDepartment of General Surgery, International School of Medicine, Medipol University, Istanbul 34010, Turkiye.
Mathias UhlenScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Jan BorenDepartment of Molecular and Clinical Medicine, University of Gothenburg and Sahlgrenska University Hospital, Gothenburg, Sweden.
Cheng ZhangScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden.
Adil MardinogluScience for Life Laboratory, KTH - Royal Institute of Technology, Stockholm, Sweden; Centre for Host-Microbiome Interactions, Faculty of Dentistry, Oral & Craniofacial Sciences, King's College London, London SE1 9RT, UK. Electronic address: adilm@scilifelab.se.
Mujdat ZeybelDepartment of Gastroenterology and Hepatology, School of Medicine, Koç University, İstanbul 34010, Turkiye; Clinical Trials Unit, Koç University Hospital, Istanbul 34010, Turkiye. Electronic address: mzeybel@ku.edu.tr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chronic hepatic injury and inflammation from various causes can lead to fibrosis and cirrhosis, potentially predisposing to hepatocellular carcinoma. The molecular mechanisms underlying fibrosis and its progression remain incompletely understood. Using a proteo-transcriptomics approach, we analyze liver and plasma samples from 330 individuals, including 40 healthy individuals and 290 patients with histologically characterized fibrosis due to chronic viral infection, alcohol consumption, or metabolic dysfunction-associated steatotic liver disease. Our findings reveal dysregulated pathways related to extracellular matrix, immune response, inflammation, and metabolism in advanced fibrosis. We also identify 132 circulating proteins associated with advanced fibrosis, with neurofascin and growth differentiation factor 15 demonstrating superior predictive performance for advanced fibrosis(area under the receiver operating characteristic curve [AUROC] 0.89 [95% confidence interval (CI) 0.81-0.97]) compared to the fibrosis-4 model (AUROC 0.85 [95% CI 0.78-0.93]). These findings provide insights into fibrosis pathogenesis and highlight the potential for more accurate non-invasive diagnosis.

Indexed as

Liver CirrhosisLiver DiseasesTranscriptomeAdultAgedBiomarkersChronic DiseaseFemaleHumansLiverMaleMiddle AgedROC CurveBiomarkerschronic liver diseaseliver fibrosismulti-omicsnon-invasivesystems biology

Identifiers

PMID39889710
PMCPMC11866494

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.