Evidence map›Paper›PMID 39889305›Full record

ReviewThe Biochemical journal2025

Expanding the tagging toolbox for visualizing translation live.

Rhiannon M Sears, Nathan L Nowling, Jake Yarbro, Ning Zhao

Abstract readReview
In one paragraph

Review in The Biochemical journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Advances in ribosome profiling technologies.Biochemical Society transactions · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rhiannon M SearsDepartment of Biochemistry and Molecular Genetics, University of Colorado-Anschutz Medical Campus, Aurora, CO, U.S.A.ORCID 0000-0002-5171-5036
Nathan L NowlingDepartment of Biochemistry and Molecular Genetics, University of Colorado-Anschutz Medical Campus, Aurora, CO, U.S.A.ORCID 0009-0004-8669-8944
Jake YarbroDepartment of Biochemistry and Molecular Genetics, University of Colorado-Anschutz Medical Campus, Aurora, CO, U.S.A.ORCID 0009-0006-9605-4549
Ning ZhaoDepartment of Biochemistry and Molecular Genetics, University of Colorado-Anschutz Medical Campus, Aurora, CO, U.S.A.ORCID 0000-0001-7092-6229

Funding

Imaging cotranslational protein folding with high spatiotemporal resolution in living cellsR00GM141453 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI ZHAO, NING · 2023 to 2025
$747k
NIGMS NIH HHS R00 GM141453
6 · The paper itself

Abstract

Translation is a highly regulated process that includes three steps: initiation, elongation, and termination. Tremendous efforts have been spent to study the regulation of each translation step. In the last two decades, researchers have begun to investigate translation by tracking it in its native and live intracellular environment with high spatiotemporal resolution. To achieve this goal, a handful of tagging tools have been developed that can distinguish nascent chains from previously synthesized mature proteins. In this review, we will focus on these tagging tools and describe their development, working mechanisms, and advantages and drawbacks in tracking translation in live mammalian cells and organisms. In the second part of the review, we will summarize novel discoveries in translation by a recently developed nascent polypeptide tracking technology using tandem epitope tag array tagging tools. The superior spatiotemporal resolution of this technology enables us to directly and continuously track nascent chains live and thus reveal preferred translation location and timing, as well as the kinetics of canonical and noncanonical translation, translation bursts, ribosome quality control, and nonsense-mediated mRNA decay. In the future, we expect more tagging tools to be developed that allow us to track other regulation processes of a protein, such as folding, modifications, and degradation. With the expanding tagging toolbox, there is potential that we can track a protein from translation to degradation to fully understand its regulation in a native live cell environment.

Indexed as

Protein BiosynthesisAnimalsHumansRibosomes

Identifiers

PMID39889305
PMCPMC12133301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.