Evidence map›Paper›PMID 39887921›Full record

ArticleMicrobial biotechnology2025

Comparative transcriptomics and metabolomics provide insight into degeneration-related physiological mechanisms of Morchella importuna after long-term preservation.

Ying Chen, Xuelian Cao, Liyuan Xie, Jie Tang, Lixu Liu, Di Wang, Xiang Wu, Tianhai Liu, Yang Yu, Yong Wang and 3 more

Abstract readComparative Study
In one paragraph

Article in Microbial biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Metabolic Influence ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ying ChenSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Xuelian CaoSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Liyuan XieSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Jie TangSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Lixu LiuSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Di WangSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Xiang WuSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Tianhai LiuSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Yang YuSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Yong WangSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Francis MartinThe National Key Laboratory of Ecological Security and Sustainable Development in Arid Region, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China.
Weihong PengSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.
Hao TanSichuan Institute of Edible Fungi, Sichuan Academy of Agricultural Sciences, Chengdu, China.ORCID https://orcid.org/0000-0002-4382-5470

Funding

1+9 Program of SAAS (1+9KJGG003)Innovation 2035 Project of SAAS (YSCX2035-009)Laboratory of Excellence ARBRE (ANR-11-LABX-0002-01)National Modern Agriculture Industry Technology System (CARS-20)National Natural Science Foundation of China (NSFC31901119)National Scientific Observation and Experimental Station of Agro-Microorganisms, Xindu (NAES085AM05)Sichuan Edible Mushroom Innovation Team of National Modern Agriculture Industry Technology System SCCXTD-2024-07Sichuan Science and Technology Planning Project Key Research and Development Project (2021YFYZ0026)the Northwest Institute of Eco-Environment and Resources, and the Scientific and Technological Projects of Gansu Province (23YFFA0013)
6 · The paper itself

Abstract

Ascomycetes fungi are often prone to degeneration. Agricultural production of the prized ascomycete mushroom Morchella importuna (black morel) typically suffers from reduced yield and malformed ascocarps owing to culture degeneration. This study compared M. importuna cultures subjected to five different long-term preservation treatments, using transcriptomics and metabolomics. Avoiding repeated subculturing in combination with nutrient-limited conditions was found to be the most beneficial method for maintaining the fruiting capability of morels. The expression of the gene sets involved in cysteine and methionine metabolism and nucleocytoplasmic transport was upregulated under nutrient-limited and nutrient-rich conditions, respectively. This increased expression was accompanied by differential accumulation of metabolites involved in nucleobase metabolism. Repeated subculturing triggered dissimilar changes in the functional modules under nutrient-rich and nutrient-limited conditions. A diverse set of cellular biochemical processes related to carbon metabolism were altered by repeated subculturing under nutrient-rich conditions, whereas glycerophospholipid and purine metabolism were key functions affected by repeated subculturing under nutrient-limited conditions. Altogether, metabolic alterations related to sulfur-containing amino-acid biosynthesis, DNA repair, and cellular structural maintenance contributed to improved preservation outcomes in terms of morel fruiting capability. Our findings contribute to a more detailed understanding of the molecular mechanisms related to subculturing and fruiting of ascomycete macrofungi after long-term preservation.

Indexed as

AscomycotaMetabolomicsPreservation, BiologicalTranscriptomeFruiting Bodies, FungalGene Expression Profiling

Identifiers

PMID39887921
PMCPMC11781861

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.