Evidence map›Paper›PMID 39885182›Full record

ArticleScientific reports2025

Global epidemiology of Mycobacterium tuberculosis lineage 4 insights from Ecuadorian genomic data.

Gabriel Morey-León, Paulina M Mejía-Ponce, Juan Carlos Fernández-Cadena, Evelyn García-Moreira, Derly Andrade-Molina, Cuauhtémoc Licona-Cassani, Pablo Fresia, Luisa Berná

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Genomic epidemiology ofMicrobial genomics · 2026
    Article
  3. Tuberculosis: An Ongoing Global Threat.Advances in experimental medicine and biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Gabriel Morey-León *Facultad de Ciencias de la Salud, Universidad Espíritu Santo, Samborondón, Ecuador. garielmorey@uees.edu.ec.ORCID 0000-0003-1824-8285
Paulina M Mejía-Ponce *Centro de Biotecnología FEMSA, Escuela de Ingeniería y Ciencias, Tecnológico de Monterrey, Monterrey, Nuevo León, México.ORCID 0000-0003-0673-020X
Juan Carlos Fernández-CadenaLaboratorio de Ciencias Ómicas, Universidad Espíritu Santo, Samborondón, Ecuador.ORCID 0000-0002-0398-8371
Evelyn García-MoreiraInstituto Superior Tecnológico Argos, Guayaquil, Ecuador.ORCID 0000-0002-2181-3364
Derly Andrade-MolinaFacultad de Ciencias de la Salud, Universidad Espíritu Santo, Samborondón, Ecuador.ORCID 0000-0002-2651-5884
Cuauhtémoc Licona-CassaniCentro de Biotecnología FEMSA, Escuela de Ingeniería y Ciencias, Tecnológico de Monterrey, Monterrey, Nuevo León, México.ORCID 0000-0002-0360-3945
Pablo FresiaUnidad Mixta Pasteur + INIA (UMPI), Institut Pasteur de Montevideo, Montevideo, Uruguay.ORCID 0000-0002-8465-476X
Luisa BernáLaboratorio de Interacciones Hospedero-Patógeno, Unidad de Biología Molecular, Institut Pasteur de Montevideo, Montevideo, Uruguay. lberna@pasteur.edu.uy.ORCID 0000-0002-9358-3414

Funding

Mexican National Council for Humanities Science and Technology (CONAHCYT) 319590
6 · The paper itself

Abstract

Tuberculosis is a global public health concern, and understanding Mycobacterium tuberculosis transmission routes and genetic diversity of M. tuberculosis is crucial for outbreak control. This study aimed to explore the genomic epidemiology and genetic diversity of M. tuberculosis in Ecuador by analyzing 88 local isolates and 415 public genomes from 19 countries within the Euro-American lineage (L4). Our results revealed significant genomic diversity among the isolates, particularly in the genes related to protein processing, carbohydrate metabolism, lipid metabolism, and xenobiotic biodegradation and metabolism. The population structure analysis showed that sub-lineages 4.3.2/3 (35.4%), 4.1.2.1 (22.7%), 4.4.1 (12.7%), and 4.1.1. (10.7%) were the most prevalent. Phylogenetic and transmission network analyses suggest that these isolates circulating within Ecuador share genetic ties with isolates from other continents, implying historical and ongoing intercontinental transmission events. Our findings underscore the importance of integrating genomic data into public health strategies for tuberculosis control and suggest that enhanced genomic surveillance is essential for understanding and mitigating the global spread of M. tuberculosis. This study provides a comprehensive genomic framework for future epidemiological investigations and control measures targeting M. tuberculosis L4 in Ecuador.

Indexed as

Genome, BacterialMycobacterium tuberculosisTuberculosisEcuadorGenetic VariationGenomicsHumansPhylogenyEcuadorGenomic clustersGenomic epidemiologySurveillanceTMRCATuberculosis

Identifiers

PMID39885182
PMCPMC11782492

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.