Evidence map›Paper›PMID 39885149›Full record

ArticleNature communications2025

Advancing the genetic engineering toolbox by combining AsCas12a knock-in mice with ultra-compact screening.

Wei Jin, Yexuan Deng, John E La Marca, Emily J Lelliott, Sarah T Diepstraten, Christina König, Lin Tai, Valentina Snetkova, Kristel M Dorighi, Luke Hoberecht and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Wei Jin *Olivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Yexuan Deng *Olivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
John E La Marca *Olivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.ORCID http://orcid.org/0000-0001-6442-9947
Emily J LelliottOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.ORCID http://orcid.org/0000-0002-5028-6938
Sarah T DiepstratenThe Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, Australia.ORCID http://orcid.org/0000-0002-1946-5161
Christina KönigOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.ORCID http://orcid.org/0000-0002-6982-9701
Lin TaiOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Valentina SnetkovaDepartment of Molecular Biology, Genentech, Inc., South San Francisco, California, USA.
Kristel M DorighiDepartment of Molecular Biology, Genentech, Inc., South San Francisco, California, USA.
Luke HoberechtComputational Sciences, Genentech, Inc., South San Francisco, California, USA.
Millicent G HedditchThe Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, Australia.
Lauren WhelanThe Walter and Eliza Hall Institute of Medical Research, Parkville, Melbourne, Australia.
Geraldine HealeyOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Dan FayleOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Kieran LauOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Margaret A PottsOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.ORCID http://orcid.org/0000-0001-9796-9683
Moore Z ChenDrug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Melbourne, Australia.ORCID http://orcid.org/0000-0002-4234-5117
Angus P R JohnstonDrug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Melbourne, Australia.ORCID http://orcid.org/0000-0001-5611-4515
Yang LiaoOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Wei ShiOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Andrew J KuehOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia.
Benjamin HaleyDepartment of Molecular Biology, Genentech, Inc., South San Francisco, California, USA.
Jean-Philippe FortinComputational Sciences, Genentech, Inc., South San Francisco, California, USA.
Marco J HeroldOlivia Newton-John Cancer Research Institute, Heidelberg, Melbourne, Australia. Marco.Herold@onjcri.org.au.ORCID http://orcid.org/0000-0001-7539-7581

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cas12a is a next-generation gene editing tool that enables multiplexed gene targeting. Here, we present a mouse model that constitutively expresses enhanced Acidaminococcus sp. Cas12a (enAsCas12a) linked to an mCherry fluorescent reporter. We demonstrate efficient single and multiplexed gene editing in vitro, using primary and transformed cells from enAsCas12a mice. We further demonstrate successful in vivo gene editing, using normal and cancer-prone enAsCas12a stem cells to reconstitute the haematopoietic system of wild-type mice. We also present compact, genome-wide Cas12a knockout libraries, with four crRNAs per gene encoded across one (Scherzo) or two (Menuetto) vectors, and demonstrate the utility of these libraries across methodologies: in vitro enrichment and drop-out screening in lymphoma cells and immortalised fibroblasts, respectively, and in vivo screens to identify lymphoma-driving events. Finally, we demonstrate CRISPR multiplexing via simultaneous gene knockout (via Cas12a) and activation (via dCas9-SAM) using primary T cells and fibroblasts. Our enAsCas12a mouse and accompanying crRNA libraries enhance genome engineering capabilities and complement current CRISPR technologies.

Indexed as

Bacterial ProteinsCRISPR-Associated ProteinsEndodeoxyribonucleasesGene EditingGene Knock-In TechniquesGenetic EngineeringAcidaminococcusAnimalsCRISPR-Cas SystemsFibroblastsLymphomaMiceBacterial ProteinsCas12a proteinCRISPR-Associated ProteinsEndodeoxyribonucleases

Identifiers

PMID39885149
PMCPMC11782673

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.