Evidence map›Paper›PMID 39885081›Full record

ArticleJournal of imaging informatics in medicine2025

Abdominal and Pelvic MRI Protocol Prediction Using Natural Language Processing.

Joshua D Warner, Robert P Hartman, Daniel J Blezek, John V Thomas

Abstract read
In one paragraph

Article in Journal of imaging informatics in medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Joshua D WarnerDepartment of Radiology, University of Wisconsin-Madison School of Medicine & Public Health, 600 Highland Ave, Madison, WI, 53792-3252, USA. jwarner@uwhealth.org.ORCID http://orcid.org/0000-0003-3579-4835
Robert P HartmanDepartment of Radiology, Mayo Clinic, Rochester, MN, USA.
Daniel J BlezekDepartment of Radiology, Mayo Clinic, Rochester, MN, USA.
John V ThomasDepartment of Radiology, Mayo Clinic, Rochester, MN, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exam protocoling is a significant non-interpretive task burden for radiologists. The purpose of this work was to develop a natural language processing (NLP) artificial intelligence (AI) solution for automated protocoling of standard abdomen and pelvic magnetic resonance imaging (MRI) exams from basic associated order information and patient metadata. This Institutional Review Board exempt retrospective study used de-identified metadata from consecutive adult abdominal and pelvic MRI scans performed at our institution spanning 2.5 years from 2019 to 2021 to fine-tune an AI model to predict the exam protocol. The NLP algorithm Bidirectional Encoder Representations from Transformers (BERT) was employed in sequence classification mode. Twelve months of data from the COVID pandemic were excluded to avoid bias from known practice and referral pattern disruptions, with approximately 46,000 MRI exams in the resulting cohort. The final trained model had an accuracy of 88.5% with a Matthews correlation coefficient of 0.874, a true positive rate of 0.872, and a true negative rate of 0.995. Subsequent expert review of the errors performed to satisfy departmental leadership showed 81.9% were in fact correct or reasonable alternative protocols, yielding real-world performance accuracy of 97.9%. We conclude that NLP algorithms, including "smaller" large language models like the BERT family often overlooked today, can predict MRI imaging protocols for the abdomen and pelvis with high real-world performance, offering to decrease radiologists' non-interpretive task load and increasing departmental efficiency.

Indexed as

AbdomenMagnetic Resonance ImagingNatural Language ProcessingPelvisAdultAlgorithmsArtificial IntelligenceFemaleHumansMaleMiddle AgedRetrospective StudiesAI (artificial/augmented intelligence)BERT (Bidirectional Encoder Representations from Transformers (an NLP model))MRI (magnetic resonance imaging)NLP (natural language processing)Protocoling

Identifiers

PMID39885081
PMCPMC12572502

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.