Evidence map›Paper›PMID 39882022›Full record

ArticleBrain communications2025

Dehydroamino acids and their crosslinks in Alzheimer's disease aggregates.

Samuel W Markovich, Brian L Frey, Mark Scalf, Michael R Shortreed, Lloyd M Smith

Abstract read
In one paragraph

Article in Brain communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Samuel W MarkovichDepartment of Chemistry, University of Wisconsin-Madison; Madison, WI 53706, USA.
Brian L FreyDepartment of Chemistry, University of Wisconsin-Madison; Madison, WI 53706, USA.
Mark ScalfDepartment of Chemistry, University of Wisconsin-Madison; Madison, WI 53706, USA.
Michael R ShortreedDepartment of Chemistry, University of Wisconsin-Madison; Madison, WI 53706, USA.
Lloyd M SmithDepartment of Chemistry, University of Wisconsin-Madison; Madison, WI 53706, USA.

Funding

Sequence-specific Hybridization Capture to Reveal the lncRNA Interactome in Prostate CancerR01CA193481 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI DAVID F. JARRARD, Lloyd M Smith · 2015 to 2026
$3.4M
Dehydroamino acids in HIV-1 capsid and matrix proteins: new potential targets for viral inactivationR21AI179434 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI SHERER, NATHAN M, SMITH, LLOYD M · 2023 to 2024
$414k
NCI NIH HHS R01 CA193481NIAID NIH HHS R21 AI179434
6 · The paper itself

Abstract

Alzheimer's disease (AD) is characterized by the accumulation of protein aggregates, which are thought to be influenced by posttranslational modifications (PTMs). Dehydroamino acids (DHAAs) are rarely observed PTMs that contain an electrophilic alkene capable of forming protein-protein crosslinks, which may lead to protein aggregation. We report here the discovery of DHAAs in the protein aggregates from AD, constituting an unknown and previously unsuspected source of extensive proteomic complexity. We used mass spectrometry-based proteomics to discover 404 sites of DHAA formation in 171 proteins from protein aggregate-enriched human brain samples, 6-fold more sites than observed in the soluble protein fractions. The DHAA modifications are observed both directly and in the form of conjugates after reacting with abundant cellular nucleophiles or crosslinking to nucleophilic amino acid residues. We report 11 such crosslinks, including three in the Tau protein, which are 10-fold more abundant in AD samples compared with age-matched controls. Many of the proteins found to contain DHAAs and their conjugates are involved in protein aggregation or pathways dysregulated in AD. DHAAs are prevalent modifications in the AD brain proteome and give rise to protein crosslinks that may contribute to protein aggregation.

Indexed as

myelinneurofibrillary tanglesposttranslational modificationprotein aggregationTau

Identifiers

PMID39882022
PMCPMC11775630

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.