Evidence map›Paper›PMID 39881492›Full record

ArticleJournal of proteome research2025

OpenMS WebApps: Building User-Friendly Solutions for MS Analysis.

Tom David Müller, Arslan Siraj, Axel Walter, Jihyung Kim, Samuel Wein, Johannes von Kleist, Ayesha Feroz, Matteo Pilz, Kyowon Jeong, Justin Cyril Sing and 3 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Tom David MüllerApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.ORCID 0000-0003-0118-9434
Arslan SirajApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.
Axel WalterApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.
Jihyung KimApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.ORCID 0000-0002-9894-4258
Samuel WeinApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.
Johannes von KleistApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.
Ayesha FerozApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.
Matteo PilzApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.ORCID 0000-0002-7470-0806
Kyowon JeongApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.ORCID 0000-0003-3776-3098
Justin Cyril SingDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.ORCID 0000-0003-0386-0092
Joshua CharkowDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.ORCID 0000-0002-4230-3646
Hannes Luc RöstDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada.ORCID 0000-0003-0990-7488
Timo SachsenbergApplied Bioinformatics, Department of Computer Science, University of Tübingen, Tübingen 72074, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Liquid chromatography-mass spectrometry (LC-MS) is an indispensable analytical technique in proteomics, metabolomics, and other life sciences. While OpenMS provides advanced open-source software for MS data analysis, its complexity can be challenging for nonexperts. To address this, we have developed OpenMS WebApps, a framework for creating user-friendly MS web applications based on the Streamlit Python package. OpenMS WebApps simplifies MS data analysis through an intuitive graphical user interface, interactive result visualizations, and support for both local and online execution. Key features include workspace management, automatic generation of input widgets, and parallel execution of tools, resulting in high performance and ready-to-use solutions for online and local deployment. This framework benefits both researchers and developers: scientists can focus on their research without the burden of complex software setups, and developers can rapidly create and distribute custom WebApps with novel algorithms. Several applications built on the OpenMS WebApps template demonstrate its utility across diverse MS-related fields, enhancing the OpenMS ecosystem for developers and a wider range of users. Furthermore, it integrates seamlessly with third-party software, extending its benefits to developers beyond the OpenMS community.

Indexed as

Mass SpectrometryProteomicsSoftwareAlgorithmsChromatography, LiquidInternetMetabolomicsUser-Computer Interfacemass spectrometrymetabolomicsOpenMSproteomicspyOpenMSStreamlitweb applications

Identifiers

PMID39881492
PMCPMC11811998

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.