Evidence map›Paper›PMID 39881079›Full record

ArticleBiochemical genetics2026

The Relationship Between Differential Expression of Non-coding RNAs (TP53TG1, LINC00342, MALAT1, DNM3OS, miR-126-3p, miR-200a-3p, miR-18a-5p) and Protein-Coding Genes (PTEN, FOXO3) and Risk of Idiopathic Pulmonary Fibrosis.

Gulnaz F Korytina, Vitaly A Markelov, Irshat A Gibadullin, Shamil R Zulkarneev, Timur R Nasibullin, Rustem H Zulkarneev, Arthur M Avzaletdinov, Sergey N Avdeev, Naufal Sh Zagidullin

Abstract read
PubMed Publisher
In one paragraph

Article in Biochemical genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gulnaz F KorytinaInstitute of Biochemistry and Genetics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IBG UFRC RAS), Pr. Oktyabrya, 71, Ufa, 450054, Russian Federation. guly_kory@mail.ru.ORCID http://orcid.org/0000-0002-1695-5173
Vitaly A MarkelovInstitute of Biochemistry and Genetics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IBG UFRC RAS), Pr. Oktyabrya, 71, Ufa, 450054, Russian Federation.ORCID http://orcid.org/0000-0002-0663-7219
Irshat A GibadullinBashkir State Medical University, Lenina Str. 3, Ufa, 450008, Russian Federation.ORCID http://orcid.org/0000-0001-9596-7342
Shamil R ZulkarneevBashkir State Medical University, Lenina Str. 3, Ufa, 450008, Russian Federation.ORCID http://orcid.org/0000-0001-6522-8530
Timur R NasibullinInstitute of Biochemistry and Genetics-Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences (IBG UFRC RAS), Pr. Oktyabrya, 71, Ufa, 450054, Russian Federation.ORCID http://orcid.org/0000-0001-8823-8678
Rustem H ZulkarneevBashkir State Medical University, Lenina Str. 3, Ufa, 450008, Russian Federation.ORCID http://orcid.org/0000-0002-9749-7070
Arthur M AvzaletdinovBashkir State Medical University, Lenina Str. 3, Ufa, 450008, Russian Federation.ORCID http://orcid.org/0000-0002-2435-8141
Sergey N AvdeevSechenov First Moscow State Medical University (Sechenov University), 8-2, Trubetskaya Str., Moscow, 119991, Russian Federation.ORCID http://orcid.org/0000-0002-5999-2150
Naufal Sh ZagidullinBashkir State Medical University, Lenina Str. 3, Ufa, 450008, Russian Federation.ORCID http://orcid.org/0000-0003-2386-6707

Funding

Russian Scientific Foundation 22-25-00019
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a rapidly progressive interstitial lung disease of unknown pathogenesis with no effective treatment currently available. Given the regulatory roles of lncRNAs (TP53TG1, LINC00342, H19, MALAT1, DNM3OS, MEG3), miRNAs (miR-218-5p, miR-126-3p, miR-200a-3p, miR-18a-5p, miR-29a-3p), and their target protein-coding genes (PTEN, TGFB2, FOXO3, KEAP1) in the TGF-β/SMAD3, Wnt/β-catenin, focal adhesion, and PI3K/AKT signaling pathways, we investigated the expression levels of selected genes in peripheral blood mononuclear cells (PBMCs) and lung tissue from patients with IPF. Lung tissue and blood samples were collected from 33 newly diagnosed, treatment-naive patients and 70 healthy controls. Gene expression levels were analyzed by RT-qPCR. TaqMan assays and TaqMan MicroRNA assay were employed to quantify the expression of target lncRNAs, mRNAs, and miRNAs. Our study identified significant differential expression in PBMCs from IPF patients compared to healthy controls, including lncRNAs MALAT1 (Fold Change = 3.809, P = 0.0001), TP53TG1 (Fold Change = 0.4261, P = 0.0021), and LINC00342 (Fold Change = 1.837, P = 0.0448); miRNAs miR-126-3p (Fold Change = 0.102, P = 0.0028), miR-200a-3p (Fold Change = 0.442, P = 0.0055), and miR-18a-5p (Fold Change = 0.154, P = 0.0034); and mRNAs FOXO3 (Fold Change = 4.604, P = 0.0032) and PTEN (Fold Change = 2.22, P = 0.0011). In lung tissue from IPF patients, significant expression changes were observed in TP53TG1 (Fold Change = 0.2091, P = 0.0305) and DNM3OS (Fold Change = 4.759, P = 0.05). Combined analysis of PBMCs expression levels for TP53TG1, MALAT1, miRNA miR-126-3p, and PTEN distinguished IPF patients from healthy controls with an AUC = 0.971, sensitivity = 0.80, and specificity = 0.955 (P = 6 × 10

Indexed as

Forkhead Box Protein O3Idiopathic Pulmonary FibrosisMicroRNAsPTEN PhosphohydrolaseRNA, Long NoncodingAgedCase-Control StudiesFemaleGene Expression RegulationHumansMaleMiddle AgedForkhead Box Protein O3FOXO3 protein, humanMALAT1 long non-coding RNA, humanMicroRNAsMIRN126 microRNA, humanMIRN18A microRNA, humanPTEN PhosphohydrolasePTEN protein, humanRNA, Long NoncodingIdiopathic pulmonary fibrosislncRNAMALAT1miR-126-3pmiRNAsmRNAsPTENTP53TG1

Identifiers

PMID39881079

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.