Evidence map›Paper›PMID 39880823›Full record

ArticleNature communications2025

Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides.

Hidenori Shimizu, Junki Miyamoto, Keiko Hisa, Ryuji Ohue-Kitano, Hiromi Takada, Mayu Yamano, Akari Nishida, Daiki Sasahara, Yuki Masujima, Keita Watanabe and 26 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Trial
  2. Article
  3. International journal of molecular sciences · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Apple Juice Fermented withFoods (Basel, Switzerland) · 2025
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Hidenori Shimizu *Laboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Junki Miyamoto *Department of Applied Biological Science, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu-shi, Tokyo, Japan.ORCID http://orcid.org/0000-0002-6994-1787
Keiko HisaNoster Inc., Kamiueno, Muko-shi, Kyoto, Japan.
Ryuji Ohue-KitanoLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Hiromi TakadaLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Mayu YamanoDepartment of Molecular Endocrinology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0002-0878-4888
Akari NishidaDepartment of Molecular Endocrinology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto, Japan.
Daiki SasaharaLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Yuki MasujimaLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Keita WatanabeLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Shota NishikawaDepartment of Molecular Endocrinology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto, Japan.
Sakura TakahashiLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Takako IkedaLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Yuya NakajimaDepartment of Endocrinology, Metabolism and Nephrology, School of Medicine, Keio University, Shinjuku-ku, Tokyo, Japan.
Naofumi YoshidaDepartment of Advanced Medical Technologies, National Cerebral and Cardiovascular Center Research Institute, Suita-shi, Osaka, Japan.ORCID http://orcid.org/0000-0003-3949-0089
Chiaki MatsuzakiResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Nonoichi-shi, Ishikawa, Japan.ORCID http://orcid.org/0000-0001-6035-0481
Takuya KageyamaCenter for Ecological Research, Kyoto University, Otsu-shi, Shiga, Japan.
Ibuki HayashiLaboratory of Ecosystems and Coevolution, Graduate School of Biostudies, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0009-0002-6429-002X
Akari MatsukiLaboratory of Mathematical Biology, Faculty of Advanced Life Science, Hokkaido University, Sapporo-shi, Hokkaido, Japan.ORCID http://orcid.org/0009-0003-8786-9189
Ryo AkashiLaboratory of Mathematical Biology, Faculty of Advanced Life Science, Hokkaido University, Sapporo-shi, Hokkaido, Japan.ORCID http://orcid.org/0009-0001-7366-9376
Seiichi KitahamaDepartment of Metabolic and Bariatric Surgery, Center for Obesity, Diabetes and Endocrinology, Chibune General Hospital, Osaka-shi, Osaka, Japan.
Masako UeyamaSleep Apnea Syndrome Treatment Center, Fukujuji Hospital, Japan Anti-Tuberculosis Association, Kiyose-shi, Tokyo, Japan.
Takumi MurakamiAdvanced Genomics Center, National Institute of Genetics, Yata, Mishima-shi, Shizuoka, Japan.ORCID http://orcid.org/0000-0002-4738-0464
Shinsuke InukiDepartment of Bioorganic Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0002-7525-1280
Junichiro IrieDepartment of Endocrinology, Metabolism and Nephrology, School of Medicine, Keio University, Shinjuku-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0003-2662-4121
Noriko Satoh-AsaharaDepartment of Endocrinology, Metabolism, and Hypertension Research, Clinical Research Institute, NHO Kyoto Medical Center, Kyoto, Japan.
Hirokazu TojuLaboratory of Ecosystems and Coevolution, Graduate School of Biostudies, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0002-3362-3285
Hiroshi MoriAdvanced Genomics Center, National Institute of Genetics, Yata, Mishima-shi, Shizuoka, Japan.ORCID http://orcid.org/0000-0003-0806-7704
Shinji NakaokaLaboratory of Mathematical Biology, Faculty of Advanced Life Science, Hokkaido University, Sapporo-shi, Hokkaido, Japan.
Tomoya YamashitaDivision of Advanced Medical Science, Graduate School of Science, Technology and Innovation, Kobe University, Kobe-shi, Hyogo, Japan.ORCID http://orcid.org/0000-0003-0267-3842
Atsushi ToyodaAdvanced Genomics Center, National Institute of Genetics, Yata, Mishima-shi, Shizuoka, Japan.ORCID http://orcid.org/0000-0002-0728-7548
Kenji YamamotoCenter for Innovative and Joint Research, Wakayama University, Wakayama-shi, Wakayama, Japan.
Hiroaki OhnoDepartment of Bioorganic Medicinal Chemistry, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0002-3246-4809
Takane KatayamaLaboratory of Molecular Biology and Bioresponse, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Hiroshi ItohDepartment of Endocrinology, Metabolism and Nephrology, School of Medicine, Keio University, Shinjuku-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0003-2514-4919
Ikuo KimuraLaboratory of Molecular Neurobiology, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan. kimura.ikuo.7x@kyoto-u.ac.jp.ORCID http://orcid.org/0000-0001-8778-145X

Funding

Japan Agency for Medical Research and Development (AMED) JP17gm1010007Japan Agency for Medical Research and Development (AMED) JP23gm1510011MEXT | Japan Science and Technology Agency (JST) JPMJMS2023MEXT | Japan Society for the Promotion of Science (JSPS) JP21H04862MEXT | Japan Society for the Promotion of Science (JSPS) JP21K19813MEXT | Japan Society for the Promotion of Science (JSPS) JP22K17771MEXT | JST | Program on Open Innovation Platform with Enterprises, Research Institute and Academia (OPERA) JPMJOP1833
6 · The paper itself

Abstract

Commensal bacteria affect host health by producing various metabolites from dietary carbohydrates via bacterial glycometabolism; however, the underlying mechanism of action remains unclear. Here, we identified Streptococcus salivarius as a unique anti-obesity commensal bacterium. We found that S. salivarius may prevent host obesity caused by excess sucrose intake via the exopolysaccharide (EPS) -short-chain fatty acid (SCFA) -carbohydrate metabolic axis in male mice. Healthy human donor-derived S. salivarius produced high EPS levels from sucrose but not from other sugars. S. salivarius abundance was significantly decreased in human donors with obesity compared with that in healthy donors, and the EPS-SCFA bacterial carbohydrate metabolic process was attenuated. Our findings reveal an important mechanism by which host-commensal interactions in glycometabolism affect energy regulation, suggesting an approach for preventing lifestyle-related diseases via prebiotics and probiotics by targeting bacteria and EPS metabolites.

Indexed as

Gastrointestinal MicrobiomeObesityPolysaccharides, BacterialStreptococcusSucroseAdultAnimalsFatty Acids, VolatileFemaleHumansMaleMiceMice, Inbred C57BLPrebioticsFatty Acids, VolatilePolysaccharides, BacterialPrebioticsSucrose

Identifiers

PMID39880823
PMCPMC11779931

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.