Evidence map›Paper›PMID 39880819›Full record

ArticleNature communications2025

Single cell profiling of circulating autoreactive CD4 T cells from patients with autoimmune liver diseases suggests tissue imprinting.

Anaïs Cardon, Thomas Guinebretière, Chuang Dong, Laurine Gil, Sakina Ado, Pierre-Jean Gavlovsky, Martin Braud, Richard Danger, Christoph Schultheiß, Aurélie Doméné and 25 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Intrahepatic Tissue-Resident CD8Liver international : official journal of the International Association for the Study of the Liver · 2026
    Article
  3. Review
  4. Experimental Models of Autoimmune Hepatitis: Disease Fidelity and Translational Relevance.Liver international : official journal of the International Association for the Study of the Liver · 2026
    Review
  5. Review
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Anaïs Cardon *Nantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.ORCID http://orcid.org/0000-0003-4650-6632
Thomas Guinebretière *Nantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.ORCID http://orcid.org/0009-0003-4461-3968
Chuang DongAix Marseille Université, CNRS, INSERM, Centre d'Immunologie de Marseille-Luminy, CIML, Marseille, France.
Laurine GilAix Marseille Université, CNRS, INSERM, Centre d'Immunologie de Marseille-Luminy, CIML, Marseille, France.
Sakina AdoAix Marseille Université, CNRS, INSERM, Centre d'Immunologie de Marseille-Luminy, CIML, Marseille, France.
Pierre-Jean GavlovskyNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.ORCID http://orcid.org/0000-0001-5736-5711
Martin BraudNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
Richard DangerNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
Christoph SchultheißLaboratory of Translational Immuno-Oncology, Department of Biomedicine, University and University Hospital Basel, Division of Oncology, University Hospital Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0001-9789-5776
Aurélie DoménéNantes Université, CHU Nantes, CNRS, Inserm, BioCore, US16, SFR Bonamy, Nantes, France.
Perrine Paul-GilloteauxNantes Université, CHU Nantes, CNRS, Inserm, BioCore, US16, SFR Bonamy, Nantes, France.ORCID http://orcid.org/0000-0002-4822-165X
Caroline ChevalierCentre d'Investigation Clinique IMAD, CHU Nantes, Nantes, France.
Laura BernierNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
Jean-Paul JudorNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
Cynthia FourgeuxNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.ORCID http://orcid.org/0000-0002-3330-7530
Astrid ImbertService Hepato-gastro-entérologie et Assistance Nutritionnelle, CHU Nantes, Nantes, France.
Marion KhaldiService Hepato-gastro-entérologie et Assistance Nutritionnelle, CHU Nantes, Nantes, France.
Edouard Bardou-JacquetCHU Rennes, Service des maladies du foie, Université Rennes, INSERM, INRAE, Institut NUMECAN, Rennes, France.
Laure ElkriefCHRU Tours, Service Hépato-Gastroentérologie, Tours, France.
Adrien LannesCHU Angers, Service Hépato-Gastroentérologie et Oncologie Digestive, Université d'Angers, Laboratoire HIFIH, UPRES EA3859, SFR 4208, Angers, France.
Christine SilvainCHU Poitiers, Service Hépato-Gastroentérologie, Poitiers, France.
Matthieu SchneeCHD Vendée-La Roche sur Yon, Service Hépato-Gastroentérologie, F- 85000, la Roche sur Yon, France.
Florence TanneCHU Brest, Service Hépato-Gastroentérologie, Brest, France.
Fabienne VavasseurCentre d'Investigation Clinique IMAD, CHU Nantes, Nantes, France.
Lucas BrusselleNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
Sophie BrouardNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
William W KwokCenter for Translational Immunology, Benaroya Research Institute, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-4843-4599
Jean-François MosnierNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
Ansgar W LohseFirst Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Jeremie PoschmannNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.ORCID http://orcid.org/0000-0002-9613-5297
Mascha BinderLaboratory of Translational Immuno-Oncology, Department of Biomedicine, University and University Hospital Basel, Division of Oncology, University Hospital Basel, Basel, Switzerland.
Jérôme GournayNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France.
Sophie ConchonNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France. sophie.conchon@univ-nantes.fr.
Pierre MilpiedAix Marseille Université, CNRS, INSERM, Centre d'Immunologie de Marseille-Luminy, CIML, Marseille, France. milpied@ciml.univ-mrs.fr.ORCID http://orcid.org/0000-0003-1873-5358
Amédée RenandNantes Université, CHU Nantes, INSERM, Center for Research in Transplantation and Translational Immunology, UMR 1064, Nantes, France. amedee.renand@univ-nantes.fr.ORCID http://orcid.org/0000-0003-2265-549X

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-19-CE17-0024
6 · The paper itself

Abstract

Autoimmune liver diseases (AILD) involve dysregulated CD4 T cell responses against liver self-antigens, but how these autoreactive T cells relate to liver tissue pathology remains unclear. Here we perform single-cell transcriptomic and T cell receptor analyses of circulating, self-antigen-specific CD4 T cells from patients with AILD and identify a subset of liver-autoreactive CD4 T cells with a distinct B-helper transcriptional profile characterized by PD-1, TIGIT and HLA-DR expression. These cells share clonal relationships with expanded intrahepatic T cells and exhibit transcriptional signatures overlapping with tissue-resident T cells in chronically inflamed environments. Using a mouse model, we demonstrate that, following antigen recognition in the liver, CD4 T cells acquire an exhausted phenotype, play a crucial role in liver damage, and are controlled by immune checkpoint pathways. Our findings thus suggest that circulating autoreactive CD4 T cells in AILD are imprinted by chronic antigen exposure to promote liver inflammation, thereby serving as a potential target for developing biomarkers and therapies for AILD.

Indexed as

Autoimmune DiseasesCD4-Positive T-LymphocytesHepatitis, AutoimmuneLiver DiseasesAdultAnimalsAutoantigensDisease Models, AnimalFemaleHLA-DR AntigensHumansLiverMaleMiceMice, Inbred C57BLMiddle AgedAutoantigensHLA-DR AntigensPDCD1 protein, humanProgrammed Cell Death 1 ReceptorReceptors, Antigen, T-CellReceptors, ImmunologicTIGIT protein, human

Identifiers

PMID39880819
PMCPMC11779892

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.