Evidence map›Paper›PMID 39878514›Full record

ArticlemBio2025

Identification of intestinal mediators of

Dan Kim, Kenneth Trang, Barbara Pees, Siavash Karimzadegan, Rahul Bodkhe, Sabrina Hammond, Michael Shapira

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dan Kim *Department of Integrative Biology, University of California, Berkeley, Berkeley, California, USA.
Kenneth Trang *Department of Integrative Biology, University of California, Berkeley, Berkeley, California, USA.
Barbara Pees *Department of Integrative Biology, University of California, Berkeley, Berkeley, California, USA.
Siavash Karimzadegan *Department of Integrative Biology, University of California, Berkeley, Berkeley, California, USA.
Rahul BodkheDepartment of Integrative Biology, University of California, Berkeley, Berkeley, California, USA.
Sabrina HammondDepartment of Integrative Biology, University of California, Berkeley, Berkeley, California, USA.
Michael ShapiraDepartment of Integrative Biology, University of California, Berkeley, Berkeley, California, USA.ORCID 0000-0003-1332-2220

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Genetic Dissection of Cells and Organisms Training ProgramT32GM132022 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Nicole King, NOAH K WHITEMAN · 2019 to 2026
$5.2M
The role of the gut microbiome in host adaptation to environmental xenobiotics - mechanisms and long-term consequencesR01ES034012 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Michael Shapira · 2022 to 2026
$1.8M
Age-dependent changes in gut microbiota composition and their significance for host agingR01AG061302 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHAPIRA, MICHAEL · 2019 to 2023
$1.6M
C. elegans as a model for studying genetic control of microbiota structure and functionR01OD024780 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHAPIRA, MICHAEL · 2018 to 2020
$1.2M
HHS | National Institutes of Health (NIH) R01 OD024780, R01AG061302NIA NIH HHS R01 AG061302NIEHS NIH HHS R01 ES034012NIGMS NIH HHS T32 GM132022NIH HHS P40 OD010440NIH HHS R01 OD024780NSF | National Science Foundation Graduate Research Fellowship Program (GRFP) DGE 2146752Rose Hills Foundation (RHF)
6 · The paper itself

Abstract

The composition of the gut microbiome is determined by a complex interplay of diet, host genetics, microbe-microbe interactions, abiotic factors, and stochasticity. Previous studies have demonstrated the importance of host genetics in community assembly of the

Indexed as

Bone Morphogenetic ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsGastrointestinal MicrobiomeSignal TransductionTransforming Growth Factor betaAnimalsEnterobacteriaceaeIntestinesNeuropeptidesBone Morphogenetic ProteinsCaenorhabditis elegans ProteinsDbl-1 protein, C elegansNeuropeptidesTransforming Growth Factor betaCaenorhabditis elegansDBL-1/BMP signalinggut microbiome

Identifiers

PMID39878514
PMCPMC11898619

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.