Evidence map›Paper›PMID 39876558›Full record

ArticlePlant communications2025

A DOF transcriptional repressor-gibberellin feedback loop plays a crucial role in modulating light-independent seed germination.

Andrea Lepri, Hira Kazmi, Gaia Bertolotti, Chiara Longo, Sara Occhigrossi, Luca Quattrocchi, Mirko De Vivo, Daria Scintu, Noemi Svolacchia, Danuse Tarkowska and 8 more

Abstract read
In one paragraph

Article in Plant communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Exploring differential gene correlations inBiotechnology reports (Amsterdam, Netherlands) · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Andrea LepriDepartment of Biology and Biotechnology Charles Darwin, University of Rome, Sapienza, P. le Aldo Moro 5, 00185 Rome, Italy.
Hira KazmiDepartment of Biology and Biotechnology Charles Darwin, University of Rome, Sapienza, P. le Aldo Moro 5, 00185 Rome, Italy.
Gaia BertolottiDepartment of Biology and Biotechnology Charles Darwin, Sapienza, via dei Sardi, 70, 00185 Rome, Italy.
Chiara LongoDepartment of Biology and Biotechnology Charles Darwin, University of Rome, Sapienza, P. le Aldo Moro 5, 00185 Rome, Italy.
Sara OcchigrossiDepartment of Biology and Biotechnology Charles Darwin, University of Rome, Sapienza, P. le Aldo Moro 5, 00185 Rome, Italy.
Luca QuattrocchiDepartment of Biology and Biotechnology Charles Darwin, University of Rome, Sapienza, P. le Aldo Moro 5, 00185 Rome, Italy.
Mirko De VivoDepartment of Biology and Biotechnology Charles Darwin, Sapienza, via dei Sardi, 70, 00185 Rome, Italy.
Daria ScintuDepartment of Biology and Biotechnology Charles Darwin, Sapienza, via dei Sardi, 70, 00185 Rome, Italy; Department of Biology, University of Pisa, via L. Ghini, 13, 56126 Pisa, Italy.
Noemi SvolacchiaDepartment of Biology and Biotechnology Charles Darwin, Sapienza, via dei Sardi, 70, 00185 Rome, Italy.
Danuse TarkowskaLaboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences, & Faculty of Science, Palacky University Olomouc, Slechtitelu 27, CZ-78371 Olomouc, Czech Republic.
Veronika TureckovaLaboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences, & Faculty of Science, Palacky University Olomouc, Slechtitelu 27, CZ-78371 Olomouc, Czech Republic.
Miroslav StrnadLaboratory of Growth Regulators, Institute of Experimental Botany, The Czech Academy of Sciences, & Faculty of Science, Palacky University Olomouc, Slechtitelu 27, CZ-78371 Olomouc, Czech Republic.
Marta Del BiancoItalian Space Agency, Rome, Italy.
Riccardo Di MambroDepartment of Biology, University of Pisa, via L. Ghini, 13, 56126 Pisa, Italy.
Paolo CostantinoDepartment of Biology and Biotechnology Charles Darwin, University of Rome, Sapienza, P. le Aldo Moro 5, 00185 Rome, Italy.
Sabrina SabatiniDepartment of Biology and Biotechnology Charles Darwin, Sapienza, via dei Sardi, 70, 00185 Rome, Italy.
Raffaele Dello IoioDepartment of Biology and Biotechnology Charles Darwin, Sapienza, via dei Sardi, 70, 00185 Rome, Italy. Electronic address: raffaele.delloioio@uniroma1.it.
Paola VittoriosoDepartment of Biology and Biotechnology Charles Darwin, University of Rome, Sapienza, P. le Aldo Moro 5, 00185 Rome, Italy. Electronic address: paola.vittorioso@uniroma1.it.

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

Plants have evolved several strategies to cope with the ever-changing environment. One example of this is given by seed germination, which must occur when environmental conditions are suitable for plant life. In the model system Arabidopsis thaliana seed germination is induced by light; however, in nature, seeds of several plant species can germinate regardless of this stimulus. While the molecular mechanisms underlying light-induced seed germination are well understood, those governing germination in the dark are still vague, mostly due to the lack of suitable model systems. Here, we employ Cardamine hirsuta, a close relative of Arabidopsis, as a powerful model system to uncover the molecular mechanisms underlying light-independent germination. By comparing Cardamine and Arabidopsis, we show that maintenance of the pro-germination hormone gibberellin (GA) levels prompt Cardamine seeds to germinate under both dark and light conditions. Using genetic and molecular biology experiments, we show that the Cardamine DOF transcriptional repressor DOF AFFECTING GERMINATION 1 (ChDAG1), homologous to the Arabidopsis transcription factor DAG1, is involved in this process functioning to mitigate GA levels by negatively regulating GA biosynthetic genes ChGA3OX1 and ChGA3OX2, independently of light conditions. We also demonstrate that this mechanism is likely conserved in other Brassicaceae species capable of germinating in dark conditions, such as Lepidium sativum and Camelina sativa. Our data support Cardamine as a new model system suitable for studying light-independent germination studies. Exploiting this system, we have also resolved a long-standing question about the mechanisms controlling light-independent germination in plants, opening new frontiers for future research.

Indexed as

CardamineGerminationGibberellinsSeedsArabidopsisArabidopsis ProteinsFeedback, PhysiologicalGene Expression Regulation, PlantLightTranscription FactorsArabidopsis ProteinsGibberellinsTranscription FactorsCardamine hirsutaDOF AFFECTING GERMINATION1gibberellinslightseed germination

Identifiers

PMID39876558
PMCPMC12010397

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.