Evidence map›Paper›PMID 39875977›Full record

ArticleBMC biology2025

Species- and strain-specific microbial modulation of interferon, innate immunity, and epithelial barrier in 2D air-liquid interface respiratory epithelial cultures.

Mian Horvath, Ruoyu Yang, Diana Cadena Castaneda, Megan Callender, Elizabeth S Aiken, Anita Y Voigt, Ryan Caldwell, José Fachi, Blanda Di Luccia, Zoe Scholar and 5 more

Abstract read
In one paragraph

Article in BMC biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Mian Horvath *The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Ruoyu Yang *The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Diana Cadena CastanedaThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Megan CallenderThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Elizabeth S AikenThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Anita Y VoigtThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Ryan CaldwellThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
José FachiWashington University School of Medicine, St. Louis, MO, 63110, USA.
Blanda Di LucciaWashington University School of Medicine, St. Louis, MO, 63110, USA.
Zoe ScholarThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Peter YuHartford Healthcare Cancer Institute, Hartford, CT, 06102, USA.
Andrew SalnerHartford Healthcare Cancer Institute, Hartford, CT, 06102, USA.
Marco ColonnaWashington University School of Medicine, St. Louis, MO, 63110, USA.
Karolina PaluckaThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.
Julia OhThe Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA. Julia.Oh@duke.edu.

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Paul Robson · 1985 to 2026
$61.9M
Technology Development Project - Increasing the complexity of ex vivo human airway models for studying immune response to viral infectionU19AI142733 · NIAID · JACKSON LABORATORY · PI Anna Karolina Palucka · 2019 to 2026
$23.1M
Metagenomes to Therapeutics: Defining the Rules for Engineering the Skin MicrobiomeDP2GM126893 · NIGMS · JACKSON LABORATORY · PI OH, JULIA · 2017 to 2017
$2.8M
The UConn/JAX-GM Training Program in Genomic ScienceT32HG010463 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Mark D ADAMS, Christine R Beck · 2020 to 2026
$1.5M
NCI NIH HHS P30 CA034196NHGRI NIH HHS T32 HG010463NIAID NIH HHS U19 AI142733NIGMS NIH HHS DP2 GM126893NIH HHS T32HG010463NIH HHS U19AI142733
6 · The paper itself

Abstract

backgroundThe microbiome regulates the respiratory epithelium's immunomodulatory functions. To explore how the microbiome's biodiversity affects microbe-epithelial interactions, we screened 58 phylogenetically diverse microbes for their transcriptomic effect on human primary bronchial air-liquid interface (ALI) cell cultures.

resultsWe found distinct species- and strain-level differences in host innate immunity and epithelial barrier response. Strikingly, we found that host interferon, an antiviral response, was one of the most variable host processes. This variability was not driven by microbial phylogenetic diversity, bioburden, nor by the microbe's ability to stimulate other innate immunity pathways.

conclusionsMicrobial colonization differentially stimulates host gene expression with variations observed across phylogenetically diverse microbes and across different strains of the same species. Our study provides a foundation for understanding how the respiratory microbiome's biodiversity affects epithelial, and particularly antiviral, innate immunity.

Indexed as

Epithelial CellsImmunity, InnateInterferonsMicrobiotaRespiratory MucosaBacteriaBronchiCells, CulturedHumansSpecies SpecificityInterferonsAntiviral immunityBacteriaEpitheliumInterferonPhylogenetically diverse microbesRespiratory microbiomeRNA-seqStrain differences

Identifiers

PMID39875977
PMCPMC11776145

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.