Evidence map›Paper›PMID 39875369›Full record

ArticleNature communications2025

Single-cell transcriptomics of bronchoalveolar lavage during PRRSV infection with different virulence.

Byeonghwi Lim, Seung-Chai Kim, Hwan-Ju Kim, Jae-Hwan Kim, Young-Jun Seo, Chiwoong Lim, Yejee Park, Sunirmal Sheet, Dahye Kim, Do-Hwan Lim and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Byeonghwi Lim *Functional Genomics & Bioinformatics Laboratory, Department of Animal Science and Technology, Chung-Ang University, Anseong, Gyeonggi-do, 17546, Republic of Korea.ORCID http://orcid.org/0000-0001-8489-0044
Seung-Chai Kim *College of Veterinary Medicine, Jeonbuk National University, Iksan, Jeollabuk-do, 54596, Republic of Korea.ORCID http://orcid.org/0000-0002-1152-2248
Hwan-Ju KimCollege of Veterinary Medicine, Jeonbuk National University, Iksan, Jeollabuk-do, 54596, Republic of Korea.ORCID http://orcid.org/0000-0001-5524-4908
Jae-Hwan KimAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, Jeollabuk-do, 55365, Republic of Korea.
Young-Jun SeoFunctional Genomics & Bioinformatics Laboratory, Department of Animal Science and Technology, Chung-Ang University, Anseong, Gyeonggi-do, 17546, Republic of Korea.ORCID http://orcid.org/0000-0001-7520-7733
Chiwoong LimFunctional Genomics & Bioinformatics Laboratory, Department of Animal Science and Technology, Chung-Ang University, Anseong, Gyeonggi-do, 17546, Republic of Korea.ORCID http://orcid.org/0000-0002-6272-4464
Yejee ParkAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, Jeollabuk-do, 55365, Republic of Korea.
Sunirmal SheetAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, Jeollabuk-do, 55365, Republic of Korea.
Dahye KimAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, Jeollabuk-do, 55365, Republic of Korea.
Do-Hwan LimSchool of Systems Biomedical Science, Soongsil University, Seoul, 06978, Republic of Korea.
Kyeongsoon ParkDepartment of Systems Biotechnology, Chung-Ang University, Anseong, Gyeonggi-do, 17546, Republic of Korea.ORCID http://orcid.org/0000-0002-8558-3983
Kyung-Tai LeeAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, Jeollabuk-do, 55365, Republic of Korea. leekt@korea.kr.ORCID http://orcid.org/0000-0003-0990-4818
Won-Il KimCollege of Veterinary Medicine, Jeonbuk National University, Iksan, Jeollabuk-do, 54596, Republic of Korea. kwi0621@jbnu.ac.kr.ORCID http://orcid.org/0000-0002-0465-0794
Jun-Mo KimFunctional Genomics & Bioinformatics Laboratory, Department of Animal Science and Technology, Chung-Ang University, Anseong, Gyeonggi-do, 17546, Republic of Korea. junmokim@cau.ac.kr.ORCID http://orcid.org/0000-0002-6934-398X

Funding

National Research Foundation of Korea (NRF) NRF-2022R1A2C1005830Rural Development Administration (RDA) PJ015611
6 · The paper itself

Abstract

Porcine reproductive and respiratory syndrome virus (PRRSV) causes significant economic losses in the global swine industry due to its high genetic diversity and different virulence levels, which complicate disease management and vaccine development. This study evaluated longitudinal changes in the immune cell composition of bronchoalveolar lavage fluid and the clinical outcomes across PRRSV strains with varying virulence, using techniques including single-cell transcriptomics. In highly virulent infection, faster viral replication results in an earlier peak lung-damage time point, marked by significant interstitial pneumonia, a significant decrease in macrophages, and an influx of lymphocytes. Viral tracking reveals less than 5% of macrophages are directly infected, and further analysis indicates bystander cell death, likely regulated by exosomal microRNAs as a significant factor. In contrast, the peak intermediate infection shows a delayed lung-damage time point with fewer cell population modifications. Furthermore, anti-inflammatory M2-like macrophages (SPP1-CXCL14

Indexed as

Bronchoalveolar Lavage FluidPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSingle-Cell AnalysisTranscriptomeAnimalsGene Expression ProfilingLungMacrophagesMicroRNAsSwineVirulenceVirus ReplicationMicroRNAs

Identifiers

PMID39875369
PMCPMC11775223

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.