Evidence map›Paper›PMID 39875097›Full record

ArticleOpen biology2025

Trace elements increase replicability of microbial growth.

Amit Shimoga Nadig, Rotem Gross, Tobias Bollenbach, Gerrit Ansmann

Abstract read
In one paragraph

Article in Open biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Amit Shimoga NadigInstitute for Biological Physics, University of Cologne, Zülpicher Straße 77, Köln 50937, Germany.ORCID 0000-0001-6934-7510
Rotem GrossInstitute for Biological Physics, University of Cologne, Zülpicher Straße 77, Köln 50937, Germany.ORCID 0000-0002-1888-046X
Tobias BollenbachInstitute for Biological Physics, University of Cologne, Zülpicher Straße 77, Köln 50937, Germany.ORCID 0000-0003-4398-476X
Gerrit AnsmannInstitute for Biological Physics, University of Cologne, Zülpicher Straße 77, Köln 50937, Germany.ORCID 0000-0002-5472-7067

Funding

Deutsche Forschungsgemeinschaft
6 · The paper itself

Abstract

Trace elements are often omitted from chemically defined growth media. From established properties of trace elements, we deduce that this omission makes experiments unnecessarily sensitive to unavoidable contamination with trace elements. We confirm this experimentally by growing 11 bacterial strains in high replicate with and without supplementing trace elements, keeping all other conditions as fixed as possible to isolate the effect of trace elements. We find that supplementing trace elements considerably reduces variability of growth even in this benign scenario, and we argue that typical experimental set-ups exacerbate this. We discuss implications for the design and use of trace-element supplements and in particular argue that their use should be standard practice, as they can reduce variability of almost all experiments using chemically defined media, taking a step towards greater precision and replicability in microbiology.

Indexed as

BacteriaCulture MediaTrace ElementsReproducibility of ResultsCulture MediaTrace Elementsgrowth mediamicrobiology methodsreplicabilityreproducibilitytrace elements

Identifiers

PMID39875097
PMCPMC11774585

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.