Evidence map›Paper›PMID 39874186›Full record

ArticleActa crystallographica Section B, Structural science, crystal engineering and materials2025

Accurate and efficient representation of intramolecular energy in ab initio generation of crystal structures. Part III: partitioning into torsional groups.

Isaac J Sugden, David H Bowskill, Benjamin I Tan, Yizu Zhang, Claire S Adjiman, Constantinos C Pantelides

Abstract read
In one paragraph

Article in Acta crystallographica Section B, Structural science, crystal engineering and materials, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Isaac J SugdenDepartment of Chemical Engineering, Sargent Centre for Process Systems Engineering, Institute for Molecular Science and Engineering, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0002-4612-9163
David H BowskillDepartment of Chemical Engineering, Sargent Centre for Process Systems Engineering, Institute for Molecular Science and Engineering, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0003-2297-1126
Benjamin I TanDepartment of Chemical Engineering, Sargent Centre for Process Systems Engineering, Institute for Molecular Science and Engineering, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0002-7812-4252
Yizu ZhangDepartment of Chemical Engineering, Sargent Centre for Process Systems Engineering, Institute for Molecular Science and Engineering, Imperial College London, London SW7 2AZ, United Kingdom.
Claire S AdjimanDepartment of Chemical Engineering, Sargent Centre for Process Systems Engineering, Institute for Molecular Science and Engineering, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0002-4573-7722
Constantinos C PantelidesDepartment of Chemical Engineering, Sargent Centre for Process Systems Engineering, Institute for Molecular Science and Engineering, Imperial College London, London SW7 2AZ, United Kingdom.ORCID 0000-0001-8326-0593

Funding

Engineering and Physical Sciences Research Council EP/J003840/1Engineering and Physical Sciences Research Council EP/J014958/1Engineering and Physical Sciences Research Council EP/P020194Engineering and Physical Sciences Research Council EP/P022561/1
6 · The paper itself

Abstract

We present an approach to reduce this computational cost substantially, based on the partitioning of the molecule into geometrically separated torsional groups, with the dependence of the intramolecular energy and atomic point charges and dependent degrees of freedom on molecular conformation being computed as a linear combination of the contributions of these groups. This can lead to large savings in computational cost without a significant impact on accuracy, as demonstrated in the cases of N-acetyl-para-aminophenol (paracetamol) and methyl 4-hydroxybenzoate (methyl paraben). The approach is also applied successfully to two larger molecules, benzyl [4-(4-methyl-5-[(4-methylphenyl)sulfonyl]-1,3-thiazol-2-yl)phenyl]carbamate (molecule XX from the fifth CSP blind test) and (2S)-2-[4-(3-fluorobenzyloxy)benzylamino]propionamide (safinamide), for which we conduct the first reported CSP study. In both cases, the use of torsional groups results in over 99% reduction in computational cost, which enables the generation of an initial CSP landscape with high-quality structures found within the standard cutoff of 20 kJ mol

Indexed as

computational chemistrycrystal structure predictionenergy partitioningflexible molecules

Identifiers

PMID39874186
PMCPMC11801705

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.