Evidence map›Paper›PMID 39873147›Full record

ArticleMolecular cancer therapeutics2025

Identification of a TNIK-CDK9 Axis as a Targetable Strategy for Platinum-Resistant Ovarian Cancer.

Noah Puleo, Harini Ram, Michele L Dziubinski, Dylan Carvette, Jessica Teitel, Sreeja C Sekhar, Karan Bedi, Aaron Robida, Michael M Nakashima, Sadaf Farsinejad and 9 more

Abstract read
In one paragraph

Article in Molecular cancer therapeutics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Noah PuleoDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0001-5858-393X
Harini RamDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0009-0002-5936-4565
Michele L DziubinskiDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0003-0314-0634
Dylan CarvetteDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0009-0005-9251-5136
Jessica TeitelDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0002-8962-4690
Sreeja C SekharDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0002-9827-5349
Karan BediThe Rogel Cancer Center, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0002-7843-738X
Aaron RobidaLife Sciences Institute, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0003-4867-9641
Michael M NakashimaThe Rogel Cancer Center, University of Michigan, Ann Arbor, Michigan.ORCID 0009-0006-1944-4199
Sadaf FarsinejadDepartment of Chemistry and Chemical Biology, Stevens Institute of Technology, Hoboken, New Jersey.ORCID 0009-0004-2216-3895
Marcin IwanickiDepartment of Chemistry and Chemical Biology, Stevens Institute of Technology, Hoboken, New Jersey.ORCID 0000-0001-8375-8447
Wojciech SenkowskiBiotech Research & Innovation Centre, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0001-8120-1944
Arpita RayBenevolentAI, London, United Kingdom.ORCID 0009-0003-6415-2265
Thomas J BollermanBenevolentAI, London, United Kingdom.ORCID 0009-0000-9361-3532
James DunbarBenevolentAI, London, United Kingdom.ORCID 0009-0008-6752-1421
Peter RichardsonBenevolentAI, London, United Kingdom.ORCID 0000-0001-7813-041X
Andrea TaddeiBenevolentAI, London, United Kingdom.ORCID 0009-0008-3823-7157
Chantelle HudsonBenevolentAI, London, United Kingdom.ORCID 0009-0006-1179-7790
Analisa DiFeoDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0001-8319-6763

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Eric R. Fearon · 1988 to 2026
$178.2M
Examining the role of the miR-181a:Wnt/B-catenin axis in ovarian cancerR01CA197780 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Analisa Virginia DiFeo · 2016 to 2026
$3.3M
Training Program in Translational ResearchT32GM141840 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ANDREW P LIEBERMAN, Zaneta Nikolovska-Coleska · 2021 to 2026
$2.0M
Center for Cancer Research (CCR) P30CA046592Danish Cancer Society Research Center (DCRC) R204-A12322Horizon 2020 Framework Programme (H2020) no. 845045National Cancer Institute (NCI) R01CA197780NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA197780NIGMS NIH HHS T32 GM141840
6 · The paper itself

Abstract

Up to 90% of patients with high-grade serous ovarian cancer (HGSC) will develop resistance to platinum-based chemotherapy, posing substantial therapeutic challenges due to a lack of universally druggable targets. Leveraging BenevolentAI's artificial intelligence (AI)-driven approach to target discovery, we screened potential AI-predicted therapeutic targets mapped to unapproved tool compounds in patient-derived 3D models. This identified TNIK, which is modulated by NCB-0846, as a novel target for platinum-resistant HGSC. Targeting by this compound demonstrated efficacy across both in vitro and ex vivo organoid platinum-resistant models. Additionally, NCB-0846 treatment effectively decreased Wnt activity, a known driver of platinum resistance; however, we found that these effects were not solely mediated by TNIK inhibition. Comprehensive AI, in silico, and in vitro analyses revealed CDK9 as another key target driving NCB-0846's efficacy. Interestingly, TNIK and CDK9 co-expression positively correlated, and chromosomal gains in both served as prognostic markers for poor patient outcomes. Combined knockdown of TNIK and CDK9 markedly diminished downstream Wnt targets and reduced chemotherapy-resistant cell viability. Furthermore, we identified CDK9 as a novel mediator of canonical Wnt activity, providing mechanistic insights into the combinatorial effects of TNIK and CDK9 inhibition and offering a new understanding of NCB-0846 and CDK9 inhibitor function. Our findings identified the TNIK-CDK9 axis as druggable targets mediating platinum resistance and cell viability in HGSC. With AI at the forefront of drug discovery, this work highlights how to ensure that AI findings are biologically relevant by combining compound screens with physiologically relevant models, thus supporting the identification and validation of potential drug targets.

Indexed as

Cyclin-Dependent Kinase 9Drug Resistance, NeoplasmOvarian NeoplasmsCell Line, TumorFemaleHumansPlatinumCDK9 protein, humanCyclin-Dependent Kinase 9Platinum

Identifiers

PMID39873147
PMCPMC11962390

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.