Evidence map›Paper›PMID 39871741›Full record

ArticleJournal of chemical information and modeling2025

Chemically Informed Deep Learning for Interpretable Radical Reaction Prediction.

Mohammadamin Tavakoli, Yin Ting T Chiu, Ann Marie Carlton, David Van Vranken, Pierre Baldi

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mohammadamin TavakoliDepartment of Computer Science, University of California, Irvine, Irvine, California 92697, United States.
Yin Ting T ChiuDepartment of Chemistry, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0001-5449-8391
Ann Marie CarltonDepartment of Chemistry, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0002-8574-1507
David Van VrankenDepartment of Chemistry, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0001-5964-7042
Pierre BaldiDepartment of Computer Science, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0001-8752-4664

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Organic radical reactions are crucial in many areas of chemistry, including synthetic, biological, and atmospheric chemistry. We develop a predictive framework based on the interaction of molecular orbitals that operates on mechanistic-level radical reactions. Given our chemistry-aware model, all predictions are provided with different levels of interpretability. Our models are trained and evaluated using the RMechDB database of radical reaction steps. Our model predicts the correct orbital interaction and products for 96% of the test reactions in RMechDB. By chaining these predictions, we perform a pathway search capable of identifying all intermediates and byproducts of a radical reaction. We test the pathway search on two classes of problems in atmospheric and polymerization chemistry. RMechRP is publicly available online at https://deeprxn.ics.uci.edu/rmechrp/.

Indexed as

Deep LearningFree RadicalsFree Radicals

Identifiers

PMID39871741
PMCPMC11815866

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.