Evidence map›Paper›PMID 39871689›Full record

ArticleHealth services research2025

Extracting Housing and Food Insecurity Information From Clinical Notes Using cTAKES.

Min Hee Kim, Silvia Miramontes, Shivani Mehta, Gabriel L Schwartz, Ye Ji Kim, Yulin Yang, Tanisha G Hill-Jarrett, Nicolas Cevallos, Ruijia Chen, M Maria Glymour and 4 more

Abstract read
In one paragraph

Article in Health services research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Min Hee KimInstitute for Health, Health Care Policy, Aging Research & School of Nursing, Rutgers, The State University of New Jersey, New Brunswick, New Jersey, USA.ORCID https://orcid.org/0000-0003-0829-1968
Silvia MiramontesBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, California, USA.
Shivani MehtaDepartment of Epidemiology & Biostatistics, University of California San Francisco, San Francisco, California, USA.
Gabriel L SchwartzDepartment of Health Management & Policy, Drexel University Dornsife School of Public Health, Philadelphia, Pennsylvania, USA.
Ye Ji KimDepartment of Epidemiology, Boston University School of Public Health, Boston, Massachusetts, USA.
Yulin YangDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, USA.ORCID https://orcid.org/0000-0002-6662-1198
Tanisha G Hill-JarrettMemory and Aging Center, Department of Neurology, University of California San Francisco, San Francisco, California, USA.
Nicolas CevallosSchool of Medicine, University of California San Francisco, San Francisco, California, USA.
Ruijia ChenDepartment of Epidemiology, Boston University School of Public Health, Boston, Massachusetts, USA.
M Maria GlymourDepartment of Epidemiology, Boston University School of Public Health, Boston, Massachusetts, USA.
Erin L FergusonDepartment of Epidemiology & Biostatistics, University of California San Francisco, San Francisco, California, USA.
Scott C ZimmermanDepartment of Epidemiology & Biostatistics, University of California San Francisco, San Francisco, California, USA.
Minhyuk ChoiDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, California, USA.
Kendra D SimsDepartment of Epidemiology, Boston University School of Public Health, Boston, Massachusetts, USA.

Funding

Catalyzing Systemic Change at Drexel University to Support Diverse Faculty in Health Disparities Research - Administrative SupplementU54CA267735 · NCI · DREXEL UNIVERSITY · PI DIEZ ROUX, ANA VICTORIA, GITLIN, LAURA N. · 2021 to 2024
$14.2M
Building an unbiased pooled cohort for the study of lifecourse social and vascular determinants of Alzheimer's Disease and Related DisordersR01AG072681 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GLYMOUR, MEDELLENA MARIA, ZEKI AL HAZZOURI, ADINA · 2021 to 2025
$4.0M
Racial Disparities in Delayed Dementia Diagnosis: Structural Determinants and Validation of Timeliness MeasuresR00AG078405 · NIA · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI Min Hee Kim · 2024 to 2026
$742k
Structural Gendered RacismK23AG084871 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Tanisha G Hill-Jarrett · 2024 to 2026
$593k
Lifecourse Stressors and Social Disparities in Cognitive Aging: The Roles of Social Networks and Sleep DisturbanceK00AG068431 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, RUIJIA · 2021 to 2024
$330k
Racial Disparities in Delayed Dementia Diagnosis: Structural Determinants and Validation of Timeliness MeasuresK99AG078405 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KIM, MIN HEE · 2022 to 2023
$248k
Community Empowerment, Vascular Risk, and ADRD Disparities: Translating Research to Public PolicyK99AG083121 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SIMS, KENDRA D · 2023 to 2024
$243k
Evaluating social and clinical risk factors for the progression from Mild CognitiveImpairment to Alzheimer’s Disease and Related Dementias using Real World ClinicalDataF31AG085938 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIZARRAGA, SILVIA MIRAMONTES · 2024 to 2025
$92k
Evaluating routine clinical decisions in providing primary care for people living with Alzheimer's Disease or Alzheimer's Related Disorders: using electronic health records to provide timely evidenceF31AG085965 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERGUSON, ERIN LAURA · 2024 to 2025
$86k
A natural language processing approach to identify social risk factors from neonatal intensive care unit patients’ (NICU) electronic health recordsF31MD019214 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MEHTA, SHIVANI · 2024 to 2024
$30k
NCI NIH HHS U54 CA267735NIA NIH HHS F31 AG085938NIA NIH HHS F31 AG085965NIA NIH HHS K00 AG068431NIA NIH HHS K23 AG084871NIA NIH HHS K99 AG078405NIA NIH HHS K99 AG083121NIA NIH HHS R00 AG078405NIA NIH HHS R01 AG072681NIH HHS 4R00AG07840501-03NIH HHS 5K00AG068431-06NIH HHS 5K99AG078405-02NIH HHS 5R01AG072681-04NIH HHS F31AG085938NIH HHS F31AG085965NIH HHS F31MD019214NIH HHS K23AG084871NIH HHS K99AG083121NIH HHS U54CA267735-03NIMHD NIH HHS F31 MD019214
6 · The paper itself

Abstract

objectiveTo assess the utility and challenges of using natural language processing (NLP) in electronic health records (EHRs) to ascertain health-related social needs (HRSNs) among older adults. STUDY SETTING AND

designWe extracted HRSN information using the NLP system Clinical Text Analysis and Knowledge Extraction System (cTAKES), combined with Concept Unique Identifiers and Systematized Nomenclature for Medicine codes. We validated cTAKES performance, via manual chart review, on two HRSNs: food insecurity, which was included in the healthcare system's HRSN screening tool, and housing insecurity, which was not. DATA SOURCES AND ANALYTIC SAMPLE: De-identified EHRs in a large California healthcare system (January 2013 through October 2022) from 119,127 patients aged 55+ in primary and emergency care settings (n = 1,385,259 clinical notes). PRINCIPAL

findingsAlthough cTAKES had a moderate positive predictive value (77.5%) for housing insecurity, housing challenges among older adults frequently did not align with the concepts the algorithm recognized. cTAKES performed poorly for food insecurity (positive predictive value: 18.5%) because this NLP system incorrectly flagged structured fields from the screening tool.

conclusionUnstandardized terminology and poor integration of HRSN screeners in EHR remain important barriers to identifying older adults' food and housing insecurity using cTAKES.

Indexed as

Data MiningElectronic Health RecordsFood InsecurityHousingNatural Language ProcessingAgedAged, 80 and overCaliforniaFemaleHumansMaleMiddle AgedSystematized Nomenclature of Medicineclinical text analysis and knowledge extraction systemconcept unique identifierelectronic health recordhealth‐related social needsnatural language processingolder adultssystematized medical nomenclature for medicine

Identifiers

PMID39871689
PMCPMC12052509

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.