Evidence map›Paper›PMID 39869641›Full record

ArticlePLoS pathogens2025

Suppressing Tymovirus replication in plants using a variant of ubiquitin.

Anuradha De Silva, Kihun Kim, John Weiland, Jihyun Hwang, Jacky Chung, Higor S Pereira, Trushar R Patel, Joan Teyra, Ankoor Patel, Mohammed M Mira and 5 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. AnThe Journal of general virology · 2026
    Article
  2. Review
  3. Article
  4. Inhibiting Infectious Bronchitis Virus PLpro Using Ubiquitin Variants.International journal of molecular sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Anuradha De SilvaDepartment of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.
Kihun KimDepartment of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.
John WeilandSugarbeet and Potato Research Unit, Edward T. Schafer Agricultural Research Center, USDA Agricultural Research Services, North Dakota, United States of America.
Jihyun HwangDepartment of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.
Jacky ChungSchool of Pharmacy, University of Waterloo, Ontario, Canada.
Higor S PereiraAlberta RNA Research and Training Institute, University of Lethbridge Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta, Canada.
Trushar R PatelAlberta RNA Research and Training Institute, University of Lethbridge Department of Chemistry and Biochemistry, University of Lethbridge, Lethbridge, Alberta, Canada.
Joan TeyraSchool of Pharmacy, University of Waterloo, Ontario, Canada.
Ankoor PatelDepartment of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.
Mohammed M MiraDepartment of Plant Science, Faculty of Agriculture, University of Manitoba, Winnipeg, Manitoba, Canada.
Mazdak KhajehpourDepartment of Chemistry, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.
Melvin BoltonSugarbeet and Potato Research Unit, Edward T. Schafer Agricultural Research Center, USDA Agricultural Research Services, North Dakota, United States of America.
Claudio StasollaDepartment of Plant Science, Faculty of Agriculture, University of Manitoba, Winnipeg, Manitoba, Canada.
Sachdev S SidhuSchool of Pharmacy, University of Waterloo, Ontario, Canada.
Brian L MarkDepartment of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.ORCID 0000-0002-7344-1355

Funding

Canada Research ChairCanadian Institutes of Health Research COVID-19 Rapid Research FundingDepartment of Agriculture, Agricultural Research Service 3060-21000-045-00DNatural Sciences and Engineering Council of Canada
6 · The paper itself

Abstract

RNA viruses have evolved numerous strategies to overcome host resistance and immunity, including the use of multifunctional proteases that not only cleave viral polyproteins during virus replication but also deubiquitinate cellular proteins to suppress ubiquitin (Ub)-mediated antiviral mechanisms. Here, we report an approach to attenuate the infection of Arabidopsis thaliana by Turnip Yellow Mosaic Virus (TYMV) by suppressing the polyprotein cleavage and deubiquitination activities of the TYMV protease (PRO). Performing selections using a library of phage-displayed Ub variants (UbVs) for binding to recombinant PRO yielded several UbVs that bound the viral protease with nanomolar affinities and blocked its function. The strongest binding UbV (UbV3) candidate had a EC50 of 0.3 nM and inhibited both polyprotein cleavage and DUB activity of PRO in vitro. X-ray crystal structures of UbV3 alone and in complex with PRO reveal that the inhibitor exists as a dimer that binds two copies of PRO. Consistent with our biochemical and structural findings, transgenic expression of UbV3 in the cytosol of A. thaliana suppressed TYMV replication in planta, with the reduction in viral load being correlated to UbV3 expression level. Our results demonstrate the potential of using UbVs to protect plants from tymovirus infection, a family of viruses that contain numerous members of significant agricultural concern, as well as other plant viruses that express functionally related proteases with deubiquitinating activity.

Indexed as

ArabidopsisPlant DiseasesTymovirusUbiquitinVirus ReplicationPlants, Genetically ModifiedViral ProteasesViral ProteinsUbiquitinViral ProteasesViral Proteins

Identifiers

PMID39869641
PMCPMC11819560

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.