Evidence map›Paper›PMID 39868175›Full record

ArticlebioRxiv : the preprint server for biology2025

Integrated analysis of protein sequence and structure redefines viral diversity and the taxonomy of the

Peter Simmonds, Anamarija Butković, Joe Grove, Richard Mayne, Jonathon C O Mifsud, Martin Beer, Jens Bukh, J Felix Drexler, Amit Kapoor, Volker Lohmann and 4 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Peter SimmondsNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Anamarija ButkovićArchaeal Virology Unit, Institut Pasteur, Université Paris Cité, CNRS UMR6047, Paris, France.
Joe GroveMRC-University of Glasgow Centre for Virus Research, Glasgow, UK.
Richard MayneNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.ORCID 0000-0003-1915-4993
Jonathon C O MifsudSydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0001-8934-9193
Martin BeerInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald-Insel Riems, Germany.
Jens BukhCopenhagen Hepatitis C Program(CO-HEP), Department of Infectious Diseases, Copenhagen University Hospital, Hvidovre, and Department of Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
J Felix DrexlerCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Virology, Berlin, Germany.
Amit KapoorCenter for Vaccines and Immunity, The Research Institute at Nationwide Children's Hospital, Columbus, Ohio, USA.
Volker LohmannDepartment of Infectious Diseases, Molecular Virology, Heidelberg University, Heidelberg, Germany.
Donald B SmithNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Jack T StapletonDepartments of Internal Medicine, Microbiology and Immunology, University of Iowa and Iowa City VA Healthcare, Iowa City, Iowa, USA.
Nikos VasilakisDepartment of Pathology and Center for Vector-Borne and Zoonotic Diseases, University of Texas Medical Branch, Galveston, Texas, USA.ORCID 0000-0002-0708-3289
Jens H KuhnIntegrated Research Facility at Fort Detrick, Division of Clinical Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, Maryland, USA.

Funding

Coordinating Research on Emerging Arboviral Threats Encompassing the Neotropics II (CREATE-NEO II)U01AI151807 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Kathryn Alyce Hanley, MAURICIO Lacerda NOGUEIRA · 2020 to 2026
$9.8M
World Reference Center for Emerging Viruses and Arboviruses (WRCEVA)R24AI120942 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI WEAVER, SCOTT C · 2016 to 2024
$8.5M
BLRD VA I01 BX000207NIAID NIH HHS HHSN272201800013CNIAID NIH HHS R24 AI120942NIAID NIH HHS U01 AI151807Wellcome Trust
6 · The paper itself

Abstract

The

Indexed as

Envelope glycoproteinFlaviviridaeflavivirushelicaseHepaciviridaeICTVOrthoflavivirusPestiviridaeRNA-directed RNA polymerasevirus taxonomy

Identifiers

PMID39868175
PMCPMC11760431

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.