Evidence map›Paper›PMID 39868116›Full record

ArticlebioRxiv : the preprint server for biology2025

Combinatorial phenotypic landscape enables bacterial resistance to phage infection.

Anika Gupta, Norma Morella, Dmitry Sutormin, Naisi Li, Karl Gaisser, Alexander Robertson, Yaroslav Ispolatov, Georg Seelig, Neelendu Dey, Anna Kuchina

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anika GuptaInstitute for Systems Biology, Seattle, WA, USA.ORCID 0000-0002-3265-5664
Norma MorellaTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0001-8090-295X
Dmitry SutorminInstitute for Systems Biology, Seattle, WA, USA.ORCID 0000-0001-6834-4246
Naisi LiTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Karl GaisserInstitute for Systems Biology, Seattle, WA, USA.ORCID 0009-0002-8035-5137
Alexander RobertsonTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Yaroslav IspolatovDepartment of Physics, Center for Interdisciplinary Research in Astrophysics and Space Science, University of Santiago, Chile.
Georg SeeligMolecular Engineering and Sciences Institute, University of Washington, Seattle, WA, USA.ORCID 0000-0002-3163-8782
Neelendu DeyTranslational Science and Therapeutics Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0001-8825-5689
Anna KuchinaInstitute for Systems Biology, Seattle, WA, USA.ORCID 0000-0002-7267-101X

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Understanding adenoma progression: Interplay among tissue microenvironment, clonal architecture, and gut microbiomeU54CA274374 · NCI · FRED HUTCHINSON CANCER CENTER · PI William Mallory Grady · 2022 to 2026
$10.7M
Single-cell transcriptomics of complex bacterial communitiesR35GM150994 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI Anna Kuchina · 2023 to 2026
$2.1M
Resolving Oral Bacteria Interactions with a High-Throughput Low-Cost Single-Cell Transcriptomics ApproachR21DE032890 · NIDCR · UNIVERSITY OF WASHINGTON · PI KUCHINA, ANNA, MCLEAN, JEFFREY SCOTT · 2023 to 2024
$485k
NCI NIH HHS P30 CA015704NCI NIH HHS U54 CA274374NIDCR NIH HHS R21 DE032890NIGMS NIH HHS R35 GM150994
6 · The paper itself

Abstract

Success of phage therapies is limited by bacterial defenses against phages. While a large variety of anti-phage defense mechanisms has been characterized, how expression of these systems is distributed across individual cells and how their combined activities translate into protection from phages has not been studied. Using bacterial single-cell RNA sequencing, we profiled the transcriptomes of ~50,000 cells from cultures of a human pathobiont,

Identifiers

PMID39868116
PMCPMC11761130

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.