Evidence map›Paper›PMID 39868081›Full record

ArticlebioRxiv : the preprint server for biology2025

The ratio of Wnt signaling activity to Sox2 transcription factor levels predicts neuromesodermal fate potential.

Robert D Morabito, David Tatarakis, Ryan Swick, Samantha Stettnisch, Thomas F Schilling, Julia A Horsfield, Benjamin L Martin

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Robert D MorabitoDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11733, USA.ORCID 0000-0001-8330-8294
David TatarakisDepartment of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA.ORCID 0000-0001-6297-2321
Ryan SwickDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11733, USA.ORCID 0009-0003-5791-7100
Samantha StettnischDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11733, USA.ORCID 0000-0002-3255-6738
Thomas F SchillingDepartment of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA.
Julia A HorsfieldDepartment of Pathology, Dunedin School of Medicine, University of Otago, Dunedin, New Zealand.ORCID 0000-0002-9536-7790
Benjamin L MartinDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY 11733, USA.ORCID 0000-0001-5474-4492

Funding

THE ROLE OF ATROPHIN-2 IN CARTILAGE PATTERNING AND POLARITY IN ZEBRAFISHR01DE013828 · NIDCR · UNIVERSITY OF CALIFORNIA-IRVINE · PI SCHILLING, THOMAS F · 2001 to 2025
$9.1M
Dissecting single cell dynamics that coordinate neural crest migration and diversificationR01DE030565 · NIDCR · UNIVERSITY OF CALIFORNIA-IRVINE · PI NIE, QING, SCHILLING, THOMAS F · 2021 to 2025
$2.8M
Maintenance, germ-layer induction, and patterning of neuromesodermal progenitorsR01GM124282 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI MARTIN, BENJAMIN L · 2018 to 2022
$1.8M
Molecular and Cell Biology of Neuromesodermal ProgenitorsR35GM150290 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Benjamin L Martin · 2023 to 2026
$1.7M
Cell Cycle Regulation of Cell Fate and Morphogenesis in D. rerioF31HD108921 · NICHD · STATE UNIVERSITY NEW YORK STONY BROOK · PI STETTNISCH, SAMANTHA · 2022 to 2024
$114k
NICHD NIH HHS F31 HD108921NIDCR NIH HHS R01 DE013828NIDCR NIH HHS R01 DE030565NIGMS NIH HHS R01 GM124282NIGMS NIH HHS R35 GM150290
6 · The paper itself

Abstract

Neuromesodermal progenitors (NMPs) are a vertebrate cell type that contribute descendants to both the spinal cord and the mesoderm. The undifferentiated bipotential NMP state is maintained when both Wnt signaling is active and Sox2 is present. We used transgenic reporter lines to live-image both Wnt activity and Sox2 levels in NMPs and observed a unique cellular ratio in NMPs compared to NMP-derived mesoderm or neural tissue. We used this unique signature to identify the previously unknown anatomical position of a progenitor population that gives rise to the midline tissues of the floor plate of the spinal cord and the mesodermal notochord. Thus, quantification of the active Wnt signaling to Sox2 ratio can be used to predict and identify cells with neuromesodermal potential. We also developed the auxin inducible degron 2 system for use in zebrafish to test the temporal role that Sox2 plays during midline formation. We found ectopic Sox2 in the presence of Wnt activity holds cells in the undifferentiated floor plate/notochord progenitor state, and that degradation of the ectopic Sox2 is required for cells to adopt a notochord fate.

Indexed as

Auxin inducible degronFloor plateNeuromesodermal progenitorsNotochordsingle cell sequencingSox2Wnt

Identifiers

PMID39868081
PMCPMC11761523

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.