Evidence map›Paper›PMID 39867577›Full record

ArticleFrontiers in genetics2024

Depression-related innate immune genes and pan-cancer gene analysis and validation.

Yakun Yang, Wei Han, Xiaoyu Zhang, Hao Yuan, Ran Wang, Jia Yang, Cuixia An, Dongyang Huang

Abstract read
In one paragraph

Article in Frontiers in genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yakun YangDepartment of Pharmacology, The Key Laboratory of Neural and Vascular Biology, The Key Laboratory of New Drug Pharmacology and Toxicology, Ministry of Education, Collaborative Innovation Center of Hebei Province for Mechanism, Diagnosis and Treatment of Neuropsychiatric Diseases, Hebei Medical University, Shijiazhuang, Hebei, China.
Wei HanDepartment of Pharmacology, The Key Laboratory of Neural and Vascular Biology, The Key Laboratory of New Drug Pharmacology and Toxicology, Ministry of Education, Collaborative Innovation Center of Hebei Province for Mechanism, Diagnosis and Treatment of Neuropsychiatric Diseases, Hebei Medical University, Shijiazhuang, Hebei, China.
Xiaoyu ZhangSharing Service Platform for Large-Scale Scientific Research Instruments and Equipment, Hebei Medical University, Shijiazhuang, Hebei, China.
Hao YuanCentral Sterile Supply Department, Baoding No. 1 Central Hospital, Baoding, Hebei, China.
Ran WangDepartment of Psychiatry, The First Hospital of Hebei Medical University, Shijiazhuang, Hebei, China.
Jia YangOperating Room, Cheng'an County People's Hospital, Handan, Hebei, China.
Cuixia AnDepartment of Psychiatry, The First Hospital of Hebei Medical University, Shijiazhuang, Hebei, China.
Dongyang HuangDepartment of Pharmacology, The Key Laboratory of Neural and Vascular Biology, The Key Laboratory of New Drug Pharmacology and Toxicology, Ministry of Education, Collaborative Innovation Center of Hebei Province for Mechanism, Diagnosis and Treatment of Neuropsychiatric Diseases, Hebei Medical University, Shijiazhuang, Hebei, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Depression, a prevalent chronic mental disorder, presents complexities and treatment challenges that drive researchers to seek new, precise therapeutic targets. Additionally, the potential connection between depression and cancer has garnered significant attention. Methods: This study analyzed depression-related gene expression data from the GEO database. Using data normalization, differential expression analysis, WGCNA, and machine learning, we identified core genes strongly associated with depression. These genes were validated in depression patients through q-PCR and examined for expression patterns and potential roles across various cancers. Results: We identified six core genes (GRB10, TDRD9, BCL7A, GPR18, KLRG1, and THEM4) significantly associated with depression and cancer. In depression, GRB10 and TDRD9, involved in cell growth and stress responses, exhibited elevated expression, while BCL7A, GPR18, KLRG1, and THEM4, linked to immune regulation and apoptosis, showed reduced expression, suggesting dysregulated cellular signaling and impaired immune function. In cancer, these genes displayed altered expression patterns across tumor types, influencing tumor progression, prognosis, and immune microenvironment modulation. Shared molecular pathways, such as immune dysregulation and apoptosis, highlight their potential as biomarkers and therapeutic targets for both depression and cancer. Conclusion: This study integrates bioinformatics and machine learning to uncover key molecular pathways and targets for depression, introducing innovative therapeutic prospects that may enhance precision treatment for depression. Furthermore, by revealing shared mechanisms between depression and cancer, we have identified six core genes with significant functional roles in immune regulation, apoptosis, and cellular signaling. These findings not only deepen our understanding of the molecular overlap between these conditions but also lay the groundwork for developing dual-targeted therapeutic strategies. This study uniquely contributes to bridging mental health and oncology research, offering new insights and hope for improving patient outcomes in both fields.

Indexed as

DEGsdepressionGEOimmunoinfiltrationmachine learningpan-cancerWGCNA

Identifiers

PMID39867577
PMCPMC11757255

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.